Download MendeleyNovel enhancer binding site found in bacteria and eukaryota but not in archea.
Dimova, M., Devedjiev, Y.D.To be published.
5DDI
Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from pig muscle - holo enzyme - at 2.40 Angstrom resolution
- PDB DOI: https://doi.org/10.2210/pdb5DDI/pdb
- Classification: OXIDOREDUCTASE, TRANSFERASE
- Organism(s): Sus scrofa
- Mutation(s): No
- Deposited: 2015-08-24 Released: 2016-08-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.295
- R-Value Work: 0.248
- R-Value Observed: 0.249
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyceraldehyde-3-phosphate dehydrogenase | A [auth P], B [auth R], C [auth S] | 332 | Sus scrofa | Mutation(s): 0 EC: 1.2.1.12 (PDB Primary Data), 2.6.99 (PDB Primary Data) |  |
UniProt | |||||
Find proteins for P00355 (Sus scrofa) Explore P00355 Go to UniProtKB: P00355 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00355 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAD Query on NAD | F [auth P], I [auth R], L [auth S] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N |  | ||
| SO4 Query on SO4 | D [auth P] E [auth P] G [auth R] H [auth R] J [auth S] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.295
- R-Value Work: 0.248
- R-Value Observed: 0.249
- Space Group: I 2 2 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 90.9 | ¦Á = 90 |
| b = 138.97 | ¦Â = 90 |
| c = 222.3 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| AMoRE | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2016-08-24 Deposition Author(s): Dimova, M., Devedjiev, Y.D.
Revision History (Full details and data files)
- Version 1.0: 2016-08-24
Type: Initial release - Version 1.1: 2024-03-06
Changes: Data collection, Database references, Derived calculations, Refinement description
