Download MendeleySnapshort of Vibrio FadR-ligand complex structure reveals a new mechanism for bacterial fatty acid sensing
Feng, Y.J., Lin, Y., Li, D.F., Zhang, H.M., Gao, R.S., Bi, L.J., Wang, S.H.To be published.
5DV5
The fatty acid-responsive FadR repressor of Vibrio alginolyticus complex with Palmitoyl-CoA
- PDB DOI: https://doi.org/10.2210/pdb5DV5/pdb
- Classification: TRANSCRIPTION
- Organism(s): Vibrio alginolyticus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-09-21 Released: 2016-10-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.247 (Depositor), 0.250 (DCC)
- R-Value Work: 0.191 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.196 (Depositor)
Starting Model: experimental
View more details
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GntR family transcriptional regulator | 300 | Vibrio alginolyticus | Mutation(s): 0 Gene Names: AAW52_18775 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PKZ Query on PKZ | C [auth A], D [auth A], E [auth B], F [auth B] | Palmitoyl-CoA C37 H66 N7 O17 P3 S MNBKLUUYKPBKDU-BBECNAHFSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 ?
- R-Value Free: 0.247 (Depositor), 0.250 (DCC)
- R-Value Work: 0.191 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.196 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 52.78 | ¦Á = 90 |
| b = 88.48 | ¦Â = 93.13 |
| c = 61.65 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-10-05 Deposition Author(s): Lin, Y., Li, D.F., Feng, Y.J.
Revision History (Full details and data files)
- Version 1.0: 2016-10-05
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
