Download MendeleyCrystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA
Bock, T., Volz, C., Mueller, R., Blankenfeldt, W.To be published.
5K7Z
Crystal structure of AibR in complex with isovaleryl coenzyme A and operator DNA
- PDB DOI: https://doi.org/10.2210/pdb5K7Z/pdb
- NAKB: 5K7Z
- Classification: TRANSCRIPTION
- Organism(s): Myxococcus xanthus DK 1622
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-05-27 Released: 2016-12-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.92 ?
- R-Value Free: 0.245
- R-Value Work: 0.208
- R-Value Observed: 0.210
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator, TetR family | 231 | Myxococcus xanthus DK 1622 | Mutation(s): 0 Gene Names: MXAN_4263 |  | |
UniProt | |||||
Find proteins for Q1D4I5 (Myxococcus xanthus (strain DK1622)) Explore Q1D4I5 Go to UniProtKB: Q1D4I5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q1D4I5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (32-MER) | 16 | Myxococcus xanthus DK 1622 |  | ||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IVC Query on IVC | G [auth A], H [auth B], I [auth C], J [auth D] | Isovaleryl-coenzyme A C26 H44 N7 O17 P3 S UYVZIWWBJMYRCD-ZMHDXICWSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.92 ?
- R-Value Free: 0.245
- R-Value Work: 0.208
- R-Value Observed: 0.210
- Space Group: I 4 2 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 164.711 | ¦Á = 90 |
| b = 164.711 | ¦Â = 90 |
| c = 203.275 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2016-12-28 Deposition Author(s): Bock, T., Volz, C., Mueller, R., Blankenfeldt, W.
Revision History (Full details and data files)
- Version 1.0: 2016-12-28
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Refinement description
