Download MendeleyCrystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
Oliveira, R.R., Neto, R.M., Polo, C.C., Tonoli, C.C.C., Murakami, M.T., Franchini, K.G.To be published.
5KB5
Crystal structure of the adenosine kinase from Mus musculus in complex with adenosine and adenosine-diphosphate
- PDB DOI: https://doi.org/10.2210/pdb5KB5/pdb
- Classification: TRANSFERASE
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-06-02 Released: 2017-06-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.200
- R-Value Work: 0.166
- R-Value Observed: 0.167
Starting Model: experimental
View more details
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenosine kinase | 363 | Mus musculus | Mutation(s): 0 Gene Names: Adk EC: 2.7.1.20 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P55264 (Mus musculus) Explore P55264 Go to UniProtKB: P55264 | |||||
IMPC: MGI:87930 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P55264 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 7 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADP Query on ADP | C [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |  | ||
| ADN Query on ADN | B [auth A] | ADENOSINE C10 H13 N5 O4 OIRDTQYFTABQOQ-KQYNXXCUSA-N |  | ||
| PG4 Query on PG4 | H [auth A], I [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | J [auth A], K [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| K Query on K | D [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
| CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| MG Query on MG | F [auth A], G [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.200
- R-Value Work: 0.166
- R-Value Observed: 0.167
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 49.264 | ¦Á = 90 |
| b = 73.559 | ¦Â = 90 |
| c = 84.33 | ¦Ã = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SCALEPACK | data scaling |
| HKL-2000 | data reduction |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2017-06-07 Deposition Author(s): Oliveira, R.R., Neto, R.M., Polo, C.C., Tonoli, C.C.C., Murakami, M.T., Franchini, K.G.
Revision History (Full details and data files)
- Version 1.0: 2017-06-07
Type: Initial release - Version 1.1: 2017-06-14
Changes: Database references, Structure summary - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
