Download MendeleySingle-shot pink beam serial crystallography: Thaumatin
Meents, A., Oberthuer, D., Lieske, J., Srajer, V.To be published.
5MJG
Single-shot pink beam serial crystallography: Thaumatin
- PDB DOI: https://doi.org/10.2210/pdb5MJG/pdb
- Classification: PLANT PROTEIN
- Organism(s): Thaumatococcus daniellii
- Mutation(s): No
- Deposited: 2016-12-01 Released: 2017-12-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.200
- R-Value Work: 0.154
- R-Value Observed: 0.156
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thaumatin-1 | 207 | Thaumatococcus daniellii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883 Go to UniProtKB: P02883 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02883 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SRT Query on SRT | B [auth A] | S,R MESO-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-XIXRPRMCSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.200
- R-Value Work: 0.154
- R-Value Observed: 0.156
- Space Group: P 41 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 58.4 | ¦Á = 90 |
| b = 58.4 | ¦Â = 90 |
| c = 152.1 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PHASER | phasing |
| Epinorm | data reduction |
| Precognition | data reduction |
Entry History
Deposition Data
- Released Date: 2017-12-20 Deposition Author(s): Meents, A., Oberthuer, D., Lieske, J., Srajer, V.
Revision History (Full details and data files)
- Version 1.0: 2017-12-20
Type: Initial release - Version 1.1: 2018-04-18
Changes: Data collection, Database references - Version 1.2: 2024-01-17
Changes: Data collection, Database references, Refinement description - Version 1.3: 2024-10-23
Changes: Structure summary
