Download MendeleyCD44 PanDDA analysis group deposition
Bradshaw, W.J., Katis, V.L., Bezerra, G.A., Koekemoer, L., von Delft, F., Bountra, C., Brennan, P.E., Gileadi, O.To be published.
5SBL
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z126932614
- PDB DOI: https://doi.org/10.2210/pdb5SBL/pdb
- Deposition Group: G_1002221 (changed state) ExploreG_1002221
- Classification: PROTEIN BINDING
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-09-14 Released: 2021-09-22
- Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 ?
- R-Value Free: 0.195
- R-Value Work: 0.166
- R-Value Observed: 0.167
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| CD44 antigen | 152 | Mus musculus | Mutation(s): 0 Gene Names: Cd44, Ly-24 |  | |
UniProt | |||||
Find proteins for P15379 (Mus musculus) Explore P15379 Go to UniProtKB: P15379 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P15379 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| T6J (Subject of Investigation/LOI) Query on T6J | B [auth A] | 2-[(methylsulfonyl)methyl]-1H-benzimidazole C9 H10 N2 O2 S WCWTYTQSZZWNEW-UHFFFAOYSA-N |  | ||
| DMS Query on DMS | C [auth A], D [auth A], E [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.20 ?
- R-Value Free: 0.195
- R-Value Work: 0.166
- R-Value Observed: 0.167
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 30.668 | ¦Á = 90 |
| b = 81.473 | ¦Â = 117.75 |
| c = 31.911 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| BUSTER | refinement |
| Aimless | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| REFMAC | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2021-09-22 Deposition Author(s): Bradshaw, W.J., Katis, V.L., Bezerra, G.A., Koekemoer, L., von Delft, F., Bountra, C., Brennan, P.E., Gileadi, O.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute on Aging (NIH/NIA) | United States | 1RF1AG057443 |
Revision History (Full details and data files)
- Version 1.0: 2021-09-22
Type: Initial release - Version 1.1: 2024-11-13
Changes: Data collection, Structure summary
