Download MendeleyApo-form Dimer of Y77A Mutant Putative Ryanodine Receptor from Bacteroides thetaiotaomicron VPI-5482
Wu, R., Joachimiak, A., Jedrzejczak, R.To be published.
6UAM
Apo-form Dimer of Y77A Mutant Putative Ryanodine Receptor from Bacteroides thetaiotaomicron VPI-5482
- PDB DOI: https://doi.org/10.2210/pdb6UAM/pdb
- Classification: METAL TRANSPORT
- Organism(s): Bacteroides thetaiotaomicron VPI-5482
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2019-09-11 Released: 2020-08-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 ?
- R-Value Free: 0.253
- R-Value Work: 0.189
- R-Value Observed: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative ryanodine receptor | 100 | Bacteroides thetaiotaomicron VPI-5482 | Mutation(s): 1 Gene Names: BT_2247 |  | |
UniProt | |||||
Find proteins for Q8A5J2 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A5J2 Go to UniProtKB: Q8A5J2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8A5J2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | G [auth A] I [auth B] J [auth B] M [auth D] N [auth E] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | H [auth A], K [auth C], L [auth D], O [auth F] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 ?
- R-Value Free: 0.253
- R-Value Work: 0.189
- R-Value Observed: 0.192
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 74.623 | ¦Á = 90 |
| b = 89.993 | ¦Â = 110.89 |
| c = 74.482 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2020-08-05 Deposition Author(s): Wu, R., Joachimiak, A., Jedrzejczak, R., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2020-08-05
Type: Initial release - Version 1.1: 2024-11-20
Changes: Advisory, Data collection, Database references, Structure summary
