Download MendeleyComplex structure of AtHPPD with Atovaquone
Yang, G.-F., Lin, H.-Y., Dong, J.To be published.
8WQM
Complex structure of AtHPPD with Atovaquone
- PDB DOI: https://doi.org/10.2210/pdb8WQM/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2023-10-11 Released: 2024-03-13
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.219
- R-Value Work: 0.190
- R-Value Observed: 0.192
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 4-hydroxyphenylpyruvate dioxygenase | 417 | Arabidopsis thaliana | Mutation(s): 0 Gene Names: HPD, PDS1, At1g06570, F12K11.9 EC: 1.13.11.27 |  | |
UniProt | |||||
Find proteins for P93836 (Arabidopsis thaliana) Explore P93836 Go to UniProtKB: P93836 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P93836 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AOQ Query on AOQ | C [auth A] | 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione C22 H19 Cl O3 KUCQYCKVKVOKAY-CTYIDZIISA-N |  | ||
| CO Query on CO | B [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.219
- R-Value Work: 0.190
- R-Value Observed: 0.192
- Space Group: C 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 76.921 | ¦Á = 90 |
| b = 84.292 | ¦Â = 100.01 |
| c = 62.332 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-03-13 Deposition Author(s): Yang, G.-F., Lin, H.-Y., Dong, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-03-13
Type: Initial release - Version 1.1: 2024-04-17
Changes: Database references, Structure summary - Version 1.2: 2024-10-16
Changes: Structure summary
