8X3Q

Deposited: 2023-11-14 Released: 2024-10-16
Deposition Author(s): Su, J.Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Su, J.Y.

To be published.

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycosyl transferase	A [auth C], B [auth A], C [auth B], D	345	Thermosynechococcus vestitus BP-1	Mutation(s): 0 Gene Names: tll1591
UniProt
Find proteins for Q8DIJ4 (Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)) Explore Q8DIJ4 Go to UniProtKB: Q8DIJ4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8DIJ4
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 2
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranose	E [auth F], F [auth H], G [auth J], H [auth L]	4		N/A	Interactions Focus chain E [auth F] Focus chain F [auth H] Focus chain G [auth J] Focus chain H [auth L] Interactions & Density Focus chain E [auth F] Focus chain F [auth H] Focus chain G [auth J] Focus chain H [auth L]

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
UDP Query on UDP Download Ideal Coordinates CCD File SDF format, chain I [auth C] SDF format, chain J [auth A] SDF format, chain K [auth B] SDF format, chain L [auth D] MOL2 format, chain I [auth C] MOL2 format, chain J [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth D] mmCIF format, chain I [auth C] mmCIF format, chain J [auth A] mmCIF format, chain K [auth B] mmCIF format, chain L [auth D]	I [auth C], J [auth A], K [auth B], L [auth D]	URIDINE-5'-DIPHOSPHATE C₉ H₁₄ N₂ O₁₂ P₂ XCCTYIAWTASOJW-XVFCMESISA-N		Interactions Focus chain I [auth C] Focus chain J [auth A] Focus chain K [auth B] Focus chain L [auth D] Interactions & Density Focus chain I [auth C] Focus chain J [auth A] Focus chain K [auth B] Focus chain L [auth D]