Download MendeleyDaCS-oxaloacetate complex
Yang, L., Fang, Y.J.To be published.
8XU1
DaCS-oxaloacetate complex
- PDB DOI: https://doi.org/10.2210/pdb8XU1/pdb
- Classification: TRANSFERASE
- Organism(s): Desulfurella acetivorans A63
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2024-01-12 Released: 2025-01-22
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.46 ?
- R-Value Free: 0.258 (Depositor), 0.256 (DCC)
- R-Value Work: 0.211 (Depositor), 0.217 (DCC)
- R-Value Observed: 0.213 (Depositor)
Starting Model: in silico
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This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| citrate synthase | 435 | Desulfurella acetivorans A63 | Mutation(s): 19 EC: 2.3.3.16 |  | |
UniProt | |||||
Find proteins for A0A7C6A739 (Desulfurella acetivorans) Explore A0A7C6A739 Go to UniProtKB: A0A7C6A739 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A7C6A739 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| OAA (Subject of Investigation/LOI) Query on OAA | D [auth A], E [auth B], F [auth C] | OXALOACETATE ION C4 H3 O5 KHPXUQMNIQBQEV-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.46 ?
- R-Value Free: 0.258 (Depositor), 0.256 (DCC)
- R-Value Work: 0.211 (Depositor), 0.217 (DCC)
- R-Value Observed: 0.213 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 155.1 | ¦Á = 90 |
| b = 111.28 | ¦Â = 116.07 |
| c = 99.56 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-01-22 Deposition Author(s): Yang, L., Fang, Y.J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-01-22
Type: Initial release
