Download MendeleyStructure of Ikoma lyssavirus glycoprotein in pre-fusion state
Lu, G.W., Yang, F.L., Lin, S., Yang, J., Ye, F.To be published.
8ZHZ
Structure of Ikoma lyssavirus glycoprotein in pre-fusion state
- PDB DOI: https://doi.org/10.2210/pdb8ZHZ/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Ikoma lyssavirus
- Expression System: Baculovirus expression vector pFastBac1-HM
- Mutation(s): No
- Deposited: 2024-05-12 Released: 2025-02-05
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.88 ?
- R-Value Free: 0.281 (Depositor), 0.285 (DCC)
- R-Value Work: 0.225 (Depositor), 0.232 (DCC)
- R-Value Observed: 0.228 (Depositor)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glycoprotein | 440 | Ikoma lyssavirus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for J7JVS8 (Ikoma lyssavirus) Explore J7JVS8 Go to UniProtKB: J7JVS8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | J7JVS8 | ||||
Glycosylation | |||||
| Glycosylation Sites: 2 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | J [auth A] K [auth B] L [auth B] M [auth C] N [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.88 ?
- R-Value Free: 0.281 (Depositor), 0.285 (DCC)
- R-Value Work: 0.225 (Depositor), 0.232 (DCC)
- R-Value Observed: 0.228 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 122.915 | ¦Á = 90 |
| b = 90.746 | ¦Â = 90.08 |
| c = 151.311 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-02-05 Deposition Author(s): Lu, G.W., Yang, F.L., Lin, S., Yang, J., Ye, F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2025-02-05
Type: Initial release
