9C0N

FphI, Staphylococcus aureus fluorophosphonate-binding serine hydrolases I, apo form at room temperature


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 ?
  • R-Value Free: 0.170 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.150 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Similar but Distinct-Biochemical Characterization of the Staphylococcus aureus Serine Hydrolases FphH and FphI.

Fellner, M.Randall, G.Bitac, I.R.C.G.Warrender, A.K.Sethi, A.Jelinek, R.Kass, I.

(2024) Proteins 

  • DOI: https://doi.org/10.1002/prot.26785
  • Primary Citation of Related Structures:  
    8G0N, 9C0L, 9C0M, 9C0N

  • PubMed Abstract: 

    Staphylococcus aureus is a major cause of infections like bacteremia, pneumonia, and endocarditis. These infections are often linked to the ability of S. aureus to form biofilms. Several S. aureus serine hydrolases have previously been identified to be active during biofilm-forming conditions. Here, we present the biochemical characterization of two of these enzymes-fluorophosphonate binding hydrolase H and I (FphH, FphI). Cryogenic and room-temperature X-ray crystallography, enzymatic substrate profiling, small-angle X-ray scattering analysis, and molecular dynamics simulations provide new insights into similarities and differences between these two hydrolase_4 domain family members. We discover that these enzymes share an overall fold, including a flexible lid or cap region above the active site, which can be seen to be mobile in solution. Differences in the active site pocket and lid residues differentiate them and explain speed differences in their carboxyesterase substrate profile toward small unbranched carbon chain ester molecules. The first analysis of FphI is also compared to our previous knowledge of FphH and its association to stress conditions. These results enable the future precise targeting of Fph serine hydrolase family members with a long-term goal to significantly improve the health and wellbeing of individuals and populations worldwide.


  • Organizational Affiliation

    Biochemistry Department, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha/beta fold hydrolase247Staphylococcus aureus USA300-CA-263Mutation(s): 0 
Gene Names: 
EC: 3.1.1.1
UniProt
Find proteins for X5DUZ9 (Staphylococcus aureus)
Explore X5DUZ9 
Go to UniProtKB:  X5DUZ9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupX5DUZ9
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 ?
  • R-Value Free: 0.170 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.150 
  • Space Group: P 21 21 21
Unit Cell:
Length ( ? )Angle ( ? )
a = 52.656¦Á = 90
b = 61.736¦Â = 90
c = 77.177¦Ă = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Capability Build Funding - New Zealand Synchrotron Group Ltd--

Revision History  (Full details and data files)

  • Version 1.0: 2025-01-08
    Type: Initial release
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