Download MendeleyCrystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (5-O-phosphono-alpha-D-ribofuranose bound)
Liu, L., Lovell, S., Buchko, G.W., Battaile, K.P.To be published.
9DT7
Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (5-O-phosphono-alpha-D-ribofuranose bound)
- PDB DOI: https://doi.org/10.2210/pdb9DT7/pdb
- Classification: HYDROLASE
- Organism(s): Klebsiella pneumoniae
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2024-09-30 Released: 2024-10-09
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Institutes of Health/Office of the Director
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 ?
- R-Value Free: 0.152
- R-Value Work: 0.130
- R-Value Observed: 0.131
Starting Model: experimental
View more details
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ADP-ribose pyrophosphatase | 218 | Klebsiella pneumoniae | Mutation(s): 0 Gene Names: KPHS_45750 EC: 3.6.1.13 |  | |
UniProt | |||||
Find proteins for A0A0H3GVQ7 (Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)) Explore A0A0H3GVQ7 Go to UniProtKB: A0A0H3GVQ7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3GVQ7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HSX (Subject of Investigation/LOI) Query on HSX | E [auth B], F [auth B] | 5-O-phosphono-alpha-D-ribofuranose C5 H11 O8 P KTVPXOYAKDPRHY-AIHAYLRMSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | C [auth A], D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 ?
- R-Value Free: 0.152
- R-Value Work: 0.130
- R-Value Observed: 0.131
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M39DT7
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 57.509 | ¦Á = 90 |
| b = 79.74 | ¦Â = 90 |
| c = 91.709 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| Aimless | data scaling |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-10-09 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | 75N93022C00036 |
| National Institutes of Health/Office of the Director | United States | S10OD030394 |
Revision History (Full details and data files)
- Version 1.0: 2024-10-09
Type: Initial release
