Download MendeleyHigh/low resolution monomeric PLP-dependent transaminase from Desulfobacula toluolica
Matyuta, I.O., Bakunova, A.K., Nikolaeva, A.Y., Rakitina, T.V., Popov, V.O., Bezsudnova, E.Y., Boyko, K.M.To be published.
9J0V
Crystal structure of monomeric PLP-dependent transaminase from Desulfobacula toluolica in P 21 21 21 space group
- PDB DOI: https://doi.org/10.2210/pdb9J0V/pdb
- Classification: TRANSFERASE
- Organism(s): Desulfobacula toluolica
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2024-08-03 Released: 2024-09-18
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 ?
- R-Value Free: 0.236
- R-Value Work: 0.193
- R-Value Observed: 0.195
Starting Model: in silico
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dat: predicted D-alanine aminotransferase | 286 | Desulfobacula toluolica | Mutation(s): 0 EC: 2.6.1.21 |  | |
UniProt | |||||
Find proteins for K0NPP0 (Desulfobacula toluolica (strain DSM 7467 / Tol2)) Explore K0NPP0 Go to UniProtKB: K0NPP0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K0NPP0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP (Subject of Investigation/LOI) Query on PLP | B [auth A] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| PEG Query on PEG | C [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.79 ?
- R-Value Free: 0.236
- R-Value Work: 0.193
- R-Value Observed: 0.195
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 37.847 | ¦Á = 90 |
| b = 56.226 | ¦Â = 90 |
| c = 118.625 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Aimless | data scaling |
| DIALS | data reduction |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-09-18 Deposition Author(s): Matyuta, I.O., Bakunova, A.K., Nikolaeva, A.Y., Rakitina, T.V., Bezsudnova, E.Y., Popov, V.O., Boyko, K.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-09-18
Type: Initial release
