Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
EA [auth BJ]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
J [auth AJ]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)
FA [auth BK]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
K [auth AK]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
GA [auth BL]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
L [auth AL]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
HA [auth BM]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
M [auth AM]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
IA [auth BN]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
N [auth AN]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
JA [auth BO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
O [auth AO]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
KA [auth BP]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
P [auth AP]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
LA [auth BQ]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
Q [auth AQ]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
NA [auth BS]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
S [auth AS]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
B [auth AB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
W [auth BB]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
PA [auth BU]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
U [auth AU]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
SA [auth CC]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
SA [auth CC]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
XB [auth DC]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
XB [auth DC]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
TA [auth CD]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
UA [auth CE]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
ZB [auth DE]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
AC [auth DF]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
VA [auth CF]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
BC [auth DG]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
BC [auth DG]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
WA [auth CG]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
WA [auth CG]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
CC [auth DH]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
CC [auth DH]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
XA [auth CH]SCOP2B SuperfamilyRibosomal protein L9 C-domain 8032958 3000329 SCOP2B (2022-06-29)
XA [auth CH]SCOP2B SuperfamilyL9 N-domain-like 8032960 3000338 SCOP2B (2022-06-29)
YA [auth CJ]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
YA [auth CJ]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
EC [auth DJ]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
EC [auth DJ]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
FC [auth DK]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
ZA [auth CK]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
AB [auth CL]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
GC [auth DL]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
BB [auth CM]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
HC [auth DM]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
CB [auth CN]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
IC [auth DN]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
DB [auth CO]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
JC [auth DO]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
EB [auth CP]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
KC [auth DP]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
FB [auth CQ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
LC [auth DQ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
GB [auth CR]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
MC [auth DR]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
HB [auth CS]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
NC [auth DS]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
Y [auth BD]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
IB [auth CT]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
OC [auth DT]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
PC [auth DU]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
JB [auth CU]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
KB [auth CV]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
QC [auth DV]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
LB [auth CW]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
RC [auth DW]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
SC [auth DX]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
MB [auth CX]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
NB [auth CY]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
TC [auth DY]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
OB [auth CZ]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
UC [auth DZ]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
PB [auth C0]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
VC [auth D0]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
QB [auth C1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
WC [auth D1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
RB [auth C2]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
XC [auth D2]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
TB [auth C4]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
ZC [auth D4]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
AD [auth D5]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
UB [auth C5]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
YB [auth DD]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
DC [auth DI]SCOP2B SuperfamilyRibosomal protein L10-like 8079773 3000665 SCOP2B (2022-06-29)
F [auth AF]SCOP2 FamilyRibosomal protein S6 8066494 4001337 SCOP2 (2022-06-29)
F [auth AF]SCOP2 SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2 (2022-06-29)
AA [auth BF]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
BA [auth BG]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
G [auth AG]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
CA [auth BH]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
H [auth AH]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
I [auth AI]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
DA [auth BI]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EA [auth BJ]Ribosomal_S10e4ybbBJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
J [auth AJ]Ribosomal_S10e4ybbAJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
FA [auth BK]Ribosomal_S11e4ybbBK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
K [auth AK]Ribosomal_S11e4ybbAK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
GA [auth BL]Ribosom_S12_S23e4ybbBL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
L [auth AL]Ribosom_S12_S23e4ybbAL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
HA [auth BM]Ribosomal_S13_1e4ybbBM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
M [auth AM]Ribosomal_S13_1e4ybbAM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
IA [auth BN]Ribosomal_S14_1e4ybbBN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
N [auth AN]Ribosomal_S14_1e4ybbAN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
JA [auth BO]Ribosomal_S15_1e4ybbBO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
O [auth AO]Ribosomal_S15_1e4ybbAO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
KA [auth BP]Ribosomal_S16e4ybbBP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
P [auth AP]Ribosomal_S16e4ybbAP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
LA [auth BQ]Ribosomal_S17_1e4ybbBQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
Q [auth AQ]Ribosomal_S17_1e4ybbAQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
MA [auth BR]Ribosomal_S18e4ybbBR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
R [auth AR]Ribosomal_S18e4ybbAR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
NA [auth BS]Ribosomal_S19e4ybbBS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
S [auth AS]Ribosomal_S19e4ybbAS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
B [auth AB]Ribosomal_S2e4ybbAB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
W [auth BB]Ribosomal_S2e4ybbBB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
OA [auth BT]Ribosomal_S20pe4ybbBT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
T [auth AT]Ribosomal_S20pe4ybbAT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
PA [auth BU]Ribosomal_S21e4ybbBU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
U [auth AU]Ribosomal_S21e4ybbAU1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
SA [auth CC]Ribosomal_L2_1e4ybbCC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
SA [auth CC]Ribosomal_L2_Ce4ybbCC1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
XB [auth DC]Ribosomal_L2_1e4ybbDC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
XB [auth DC]Ribosomal_L2_Ce4ybbDC1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
TA [auth CD]Ribosomal_L3e4ybbCD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
UA [auth CE]Ribosomal_L4e4ybbCE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
ZB [auth DE]Ribosomal_L4e4ybbDE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
AC [auth DF]Ribosomal_L5_Ce4ybbDF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
VA [auth CF]Ribosomal_L5_Ce4ybbCF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
BC [auth DG]Ribosomal_L6e4ybbDG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
BC [auth DG]Ribosomal_L6_1e4ybbDG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
WA [auth CG]Ribosomal_L6e4ybbCG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
WA [auth CG]Ribosomal_L6_1e4ybbCG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
CC [auth DH]Ribosomal_L9_Ne4ybbDH2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
CC [auth DH]Ribosomal_L9_C_1e4ybbDH3 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
XA [auth CH]Ribosomal_L9_Ne4ybbCH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
XA [auth CH]Ribosomal_L9_C_1e4ybbCH2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
C [auth AC]Ribosomal_S3_Ce4ybbAC1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth AC]KH_2_1e4ybbAC2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
X [auth BC]Ribosomal_S3_Ce4ybbBC1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
X [auth BC]KH_2_1e4ybbBC2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
YA [auth CJ]Ribosomal_L11e4ybbCJ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
YA [auth CJ]Ribosomal_L11_Ne4ybbCJ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
EC [auth DJ]Ribosomal_L11e4ybbDJ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
EC [auth DJ]Ribosomal_L11_Ne4ybbDJ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
FC [auth DK]Ribosomal_L13e4ybbDK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
ZA [auth CK]Ribosomal_L13e4ybbCK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
AB [auth CL]Ribosomal_L14e4ybbCL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
GC [auth DL]Ribosomal_L14e4ybbDL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
BB [auth CM]Ribosomal_L27Ae4ybbCM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
HC [auth DM]Ribosomal_L27Ae4ybbDM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
CB [auth CN]Ribosomal_L16e4ybbCN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
IC [auth DN]Ribosomal_L16e4ybbDN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
DB [auth CO]Ribosomal_L17_1e4ybbCO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
JC [auth DO]Ribosomal_L17_1e4ybbDO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
EB [auth CP]Ribosomal_L18pe4ybbCP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
KC [auth DP]Ribosomal_L18pe4ybbDP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
FB [auth CQ]Ribosomal_L19e4ybbCQ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
LC [auth DQ]Ribosomal_L19e4ybbDQ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
GB [auth CR]Ribosomal_L20e4ybbCR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
MC [auth DR]Ribosomal_L20e4ybbDR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
HB [auth CS]Ribosomal_L21pe4ybbCS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
NC [auth DS]Ribosomal_L21pe4ybbDS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
D [auth AD]S4e4ybbAD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
Y [auth BD]S4e4ybbBD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
IB [auth CT]Ribosomal_L22e4ybbCT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
OC [auth DT]Ribosomal_L22e4ybbDT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
PC [auth DU]Ribosomal_L23_2e4ybbDU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
JB [auth CU]Ribosomal_L23_2e4ybbCU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
KB [auth CV]ribosomal_L24_1e4ybbCV1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
QC [auth DV]ribosomal_L24_1e4ybbDV1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
LB [auth CW]Ribosomal_L25pe4ybbCW1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
RC [auth DW]Ribosomal_L25pe4ybbDW1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
SC [auth DX]Ribosomal_L27e4ybbDX1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
MB [auth CX]Ribosomal_L27e4ybbCX1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
NB [auth CY]Ribosomal_L28e4ybbCY1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
TC [auth DY]Ribosomal_L28e4ybbDY1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
OB [auth CZ]Ribosomal_L29e4ybbCZ1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
UC [auth DZ]Ribosomal_L29e4ybbDZ1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
PB [auth C0]Ribosomal_L30e4ybbC01 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
VC [auth D0]Ribosomal_L30e4ybbD01 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
QB [auth C1]Ribosomal_L32pe4ybbC11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
WC [auth D1]Ribosomal_L32pe4ybbD11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
RB [auth C2]Ribosomal_L33e4ybbC21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
XC [auth D2]Ribosomal_L33e4ybbD21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
E [auth AE]Ribosomal_S5_Ce4ybbAE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
E [auth AE]Ribosomal_S5e4ybbAE1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
Z [auth BE]Ribosomal_S5_Ce4ybbBE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
Z [auth BE]Ribosomal_S5e4ybbBE1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
YC [auth D3]Ribosomal_L34e4ybbD31 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
SB [auth C3]Ribosomal_L34e4ybbC31 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
TB [auth C4]Ribosomal_L35pe4ybbC41 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
ZC [auth D4]Ribosomal_L35pe4ybbD41 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
AD [auth D5]Ribosomal_L36e4ybbD51 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
UB [auth C5]Ribosomal_L36e4ybbC51 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
YB [auth DD]Ribosomal_L3e4ybbDD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
DC [auth DI]Ribosomal_L10e4ybbDI1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
F [auth AF]Ribosomal_S6e4ybbAF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
AA [auth BF]Ribosomal_S6e4ybbBF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
BA [auth BG]Ribosomal_S7_1e4ybbBG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
G [auth AG]Ribosomal_S7_1e4ybbAG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
CA [auth BH]Ribosomal_S8_Ne4ybbBH2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
CA [auth BH]Ribosomal_S8_Ce4ybbBH1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
H [auth AH]Ribosomal_S8_Ne4ybbAH1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
H [auth AH]Ribosomal_S8_Ce4ybbAH2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
I [auth AI]Ribosomal_S9e4ybbAI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
DA [auth BI]Ribosomal_S9e4ybbBI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
EA [auth BJ],
J [auth AJ]
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
FA [auth BK],
K [auth AK]
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
GA [auth BL],
L [auth AL]
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
HA [auth BM],
M [auth AM]
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
IA [auth BN],
N [auth AN]
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
JA [auth BO],
O [auth AO]
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
KA [auth BP],
P [auth AP]
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
LA [auth BQ],
Q [auth AQ]
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
MA [auth BR],
R [auth AR]
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
NA [auth BS],
S [auth AS]
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
B [auth AB],
W [auth BB]
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
OA [auth BT],
T [auth AT]
PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PA [auth BU],
U [auth AU]
PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
SA [auth CC],
XB [auth DC]
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
SA [auth CC],
XB [auth DC]
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domainDomain
TA [auth CD]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
UA [auth CE],
ZB [auth DE]
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
AC [auth DF],
VA [auth CF]
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
AC [auth DF],
VA [auth CF]
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
BC [auth DG],
WA [auth CG]
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
CC [auth DH],
XA [auth CH]
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
CC [auth DH],
XA [auth CH]
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domainDomain
C [auth AC],
X [auth BC]
PF07650KH domain (KH_2)KH domainDomain
C [auth AC],
X [auth BC]
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
EC [auth DJ],
YA [auth CJ]
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
EC [auth DJ],
YA [auth CJ]
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
FC [auth DK],
ZA [auth CK]
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
AB [auth CL],
GC [auth DL]
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
BB [auth CM],
HC [auth DM]
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
CB [auth CN],
IC [auth DN]
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
DB [auth CO],
JC [auth DO]
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
EB [auth CP],
KC [auth DP]
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
FB [auth CQ],
LC [auth DQ]
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
GB [auth CR],
MC [auth DR]
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
HB [auth CS],
NC [auth DS]
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
D [auth AD],
Y [auth BD]
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth AD],
Y [auth BD]
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
IB [auth CT],
OC [auth DT]
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
JB [auth CU],
PC [auth DU]
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
KB [auth CV],
QC [auth DV]
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
KB [auth CV],
QC [auth DV]
PF00467KOW motif (KOW)KOW motif- Family
LB [auth CW],
RC [auth DW]
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
MB [auth CX],
SC [auth DX]
PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
NB [auth CY],
TC [auth DY]
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
OB [auth CZ],
UC [auth DZ]
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PB [auth C0],
VC [auth D0]
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
QB [auth C1],
WC [auth D1]
PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
RB [auth C2],
XC [auth D2]
PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
E [auth AE],
Z [auth BE]
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
E [auth AE],
Z [auth BE]
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
SB [auth C3],
YC [auth D3]
PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
TB [auth C4],
ZC [auth D4]
PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
AD [auth D5],
UB [auth C5]
PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
YB [auth DD]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
DC [auth DI]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AA [auth BF],
F [auth AF]
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
BA [auth BG],
G [auth AG]
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
CA [auth BH],
H [auth AH]
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
DA [auth BI],
I [auth AI]
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA],
V [auth BA]
16S rRNA---
EA [auth BJ],
J [auth AJ]
30S ribosomal protein S10
FA [auth BK],
K [auth AK]
30S ribosomal protein S11
GA [auth BL],
L [auth AL]
30S ribosomal protein S12
HA [auth BM],
M [auth AM]
30S ribosomal protein S13
IA [auth BN],
N [auth AN]
30S ribosomal protein S14
JA [auth BO],
O [auth AO]
30S ribosomal protein S15
KA [auth BP],
P [auth AP]
30S ribosomal protein S16
LA [auth BQ],
Q [auth AQ]
30S ribosomal protein S17
MA [auth BR],
R [auth AR]
30S ribosomal protein S18
NA [auth BS],
S [auth AS]
30S ribosomal protein S19
B [auth AB],
W [auth BB]
30S ribosomal protein S2
OA [auth BT],
T [auth AT]
30S ribosomal protein S20
PA [auth BU],
U [auth AU]
30S ribosomal protein S21
QA [auth CA]23S rRNA---
RA [auth CB],
WB [auth DB]
5S rRNA---
SA [auth CC],
XB [auth DC]
50S ribosomal protein L2
TA [auth CD]50S ribosomal protein L3
UA [auth CE],
ZB [auth DE]
50S ribosomal protein L4
AC [auth DF],
VA [auth CF]
50S ribosomal protein L5
BC [auth DG],
WA [auth CG]
50S ribosomal protein L6
CC [auth DH],
XA [auth CH]
50S ribosomal protein L9
C [auth AC],
X [auth BC]
30S ribosomal protein S3
EC [auth DJ],
YA [auth CJ]
50S ribosomal protein L11
FC [auth DK],
ZA [auth CK]
50S ribosomal protein L13
AB [auth CL],
GC [auth DL]
50S ribosomal protein L14
BB [auth CM],
HC [auth DM]
50S ribosomal protein L15
CB [auth CN],
IC [auth DN]
50S ribosomal protein L16
DB [auth CO],
JC [auth DO]
50S ribosomal protein L17
EB [auth CP],
KC [auth DP]
50S ribosomal protein L18
FB [auth CQ],
LC [auth DQ]
50S ribosomal protein L19
GB [auth CR],
MC [auth DR]
50S ribosomal protein L20
HB [auth CS],
NC [auth DS]
50S ribosomal protein L21
D [auth AD],
Y [auth BD]
30S ribosomal protein S4
IB [auth CT],
OC [auth DT]
50S ribosomal protein L22
JB [auth CU],
PC [auth DU]
50S ribosomal protein L23
KB [auth CV],
QC [auth DV]
50S ribosomal protein L24
LB [auth CW],
RC [auth DW]
50S ribosomal protein L25
MB [auth CX],
SC [auth DX]
50S ribosomal protein L27
NB [auth CY],
TC [auth DY]
50S ribosomal protein L28
OB [auth CZ],
UC [auth DZ]
50S ribosomal protein L29
PB [auth C0],
VC [auth D0]
50S ribosomal protein L30
QB [auth C1],
WC [auth D1]
50S ribosomal protein L32
RB [auth C2],
XC [auth D2]
50S ribosomal protein L33
E [auth AE],
Z [auth BE]
30S ribosomal protein S5
SB [auth C3],
YC [auth D3]
50S ribosomal protein L34
TB [auth C4],
ZC [auth D4]
50S ribosomal protein L35
AD [auth D5],
UB [auth C5]
50S ribosomal protein L36
VB [auth DA]23S rRNA---
YB [auth DD]50S ribosomal protein L3
DC [auth DI]50S ribosomal protein L10
AA [auth BF],
F [auth AF]
30S ribosomal protein S6
BA [auth BG],
G [auth AG]
30S ribosomal protein S7
CA [auth BH],
H [auth AH]
30S ribosomal protein S8
DA [auth BI],
I [auth AI]
30S ribosomal protein S9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
EA [auth BJ],
J [auth AJ]
IPR027486Small ribosomal subunit protein uS10 domainDomain
EA [auth BJ],
J [auth AJ]
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
EA [auth BJ],
J [auth AJ]
IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
EA [auth BJ],
J [auth AJ]
IPR001848Small ribosomal subunit protein uS10Family
FA [auth BK],
K [auth AK]
IPR001971Small ribosomal subunit protein uS11Family
FA [auth BK],
K [auth AK]
IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
FA [auth BK],
K [auth AK]
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
FA [auth BK],
K [auth AK]
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
GA [auth BL],
L [auth AL]
IPR005679Ribosomal protein uS12, bacterial-typeFamily
GA [auth BL],
L [auth AL]
IPR006032Small ribosomal subunit protein uS12Family
GA [auth BL],
L [auth AL]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth BM],
M [auth AM]
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
HA [auth BM],
M [auth AM]
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
HA [auth BM],
M [auth AM]
IPR001892Small ribosomal subunit protein uS13Family
HA [auth BM],
M [auth AM]
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
HA [auth BM],
M [auth AM]
IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
IA [auth BN],
N [auth AN]
IPR001209Small ribosomal subunit protein uS14Family
IA [auth BN],
N [auth AN]
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IA [auth BN],
N [auth AN]
IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
JA [auth BO],
O [auth AO]
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
JA [auth BO],
O [auth AO]
IPR000589Small ribosomal subunit protein uS15Family
JA [auth BO],
O [auth AO]
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
KA [auth BP],
P [auth AP]
IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
KA [auth BP],
P [auth AP]
IPR000307Small ribosomal subunit protein bS16Family
KA [auth BP],
P [auth AP]
IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
LA [auth BQ],
Q [auth AQ]
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
LA [auth BQ],
Q [auth AQ]
IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
LA [auth BQ],
Q [auth AQ]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth BQ],
Q [auth AQ]
IPR000266Small ribosomal subunit protein uS17Family
MA [auth BR],
R [auth AR]
IPR001648Small ribosomal subunit protein bS18Family
MA [auth BR],
R [auth AR]
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
MA [auth BR],
R [auth AR]
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
NA [auth BS],
S [auth AS]
IPR002222Small ribosomal subunit protein uS19Family
NA [auth BS],
S [auth AS]
IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
NA [auth BS],
S [auth AS]
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
NA [auth BS],
S [auth AS]
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
B [auth AB],
W [auth BB]
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth AB],
W [auth BB]
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth AB],
W [auth BB]
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth AB],
W [auth BB]
IPR001865Small ribosomal subunit protein uS2Family
OA [auth BT],
T [auth AT]
IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
OA [auth BT],
T [auth AT]
IPR002583Small ribosomal subunit protein bS20Family
PA [auth BU],
U [auth AU]
IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
PA [auth BU],
U [auth AU]
IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
PA [auth BU],
U [auth AU]
IPR001911Small ribosomal subunit protein bS21Family
SA [auth CC],
XB [auth DC]
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
SA [auth CC],
XB [auth DC]
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
SA [auth CC],
XB [auth DC]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
SA [auth CC],
XB [auth DC]
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
SA [auth CC],
XB [auth DC]
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
SA [auth CC],
XB [auth DC]
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
SA [auth CC],
XB [auth DC]
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
SA [auth CC],
XB [auth DC]
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
SA [auth CC],
XB [auth DC]
IPR002171Large ribosomal subunit protein uL2Family
TA [auth CD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
TA [auth CD]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
TA [auth CD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
TA [auth CD]IPR000597Large ribosomal subunit protein uL3Family
UA [auth CE],
ZB [auth DE]
IPR013005Large ribosomal subunit protein uL4-likeFamily
UA [auth CE],
ZB [auth DE]
IPR002136Large ribosomal subunit protein uL4Family
UA [auth CE],
ZB [auth DE]
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AC [auth DF],
VA [auth CF]
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
AC [auth DF],
VA [auth CF]
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
AC [auth DF],
VA [auth CF]
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
AC [auth DF],
VA [auth CF]
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
AC [auth DF],
VA [auth CF]
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
AC [auth DF],
VA [auth CF]
IPR002132Large ribosomal subunit protein uL5Family
BC [auth DG],
WA [auth CG]
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
BC [auth DG],
WA [auth CG]
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
BC [auth DG],
WA [auth CG]
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
BC [auth DG],
WA [auth CG]
IPR000702Large ribosomal subunit protein uL6-likeFamily
BC [auth DG],
WA [auth CG]
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
CC [auth DH],
XA [auth CH]
IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
CC [auth DH],
XA [auth CH]
IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
CC [auth DH],
XA [auth CH]
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
CC [auth DH],
XA [auth CH]
IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
CC [auth DH],
XA [auth CH]
IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
CC [auth DH],
XA [auth CH]
IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
CC [auth DH],
XA [auth CH]
IPR000244Large ribosomal subunit protein bL9Family
C [auth AC],
X [auth BC]
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth AC],
X [auth BC]
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth AC],
X [auth BC]
IPR004087K Homology domainDomain
C [auth AC],
X [auth BC]
IPR004044K Homology domain, type 2Domain
C [auth AC],
X [auth BC]
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth AC],
X [auth BC]
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth AC],
X [auth BC]
IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
C [auth AC],
X [auth BC]
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EC [auth DJ],
YA [auth CJ]
IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
EC [auth DJ],
YA [auth CJ]
IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
EC [auth DJ],
YA [auth CJ]
IPR000911Ribosomal protein uL11Family
EC [auth DJ],
YA [auth CJ]
IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
EC [auth DJ],
YA [auth CJ]
IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
EC [auth DJ],
YA [auth CJ]
IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
EC [auth DJ],
YA [auth CJ]
IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
FC [auth DK],
ZA [auth CK]
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
FC [auth DK],
ZA [auth CK]
IPR005822Large ribosomal subunit protein uL13Family
FC [auth DK],
ZA [auth CK]
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
FC [auth DK],
ZA [auth CK]
IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
AB [auth CL],
GC [auth DL]
IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
AB [auth CL],
GC [auth DL]
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
AB [auth CL],
GC [auth DL]
IPR000218Large ribosomal subunit protein uL14Family
AB [auth CL],
GC [auth DL]
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
BB [auth CM],
HC [auth DM]
IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
BB [auth CM],
HC [auth DM]
IPR021131Large ribosomal subunit protein uL15/eL18Domain
BB [auth CM],
HC [auth DM]
IPR030878Large ribosomal subunit protein uL15Family
BB [auth CM],
HC [auth DM]
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
BB [auth CM],
HC [auth DM]
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
CB [auth CN],
IC [auth DN]
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
CB [auth CN],
IC [auth DN]
IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
CB [auth CN],
IC [auth DN]
IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
CB [auth CN],
IC [auth DN]
IPR016180Large ribosomal subunit protein uL16 domainDomain
CB [auth CN],
IC [auth DN]
IPR047873Large ribosomal subunit protein uL16Family
DB [auth CO],
JC [auth DO]
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
DB [auth CO],
JC [auth DO]
IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
DB [auth CO],
JC [auth DO]
IPR000456Large ribosomal subunit protein bL17Family
EB [auth CP],
KC [auth DP]
IPR005484Large ribosomal subunit protein uL18Family
EB [auth CP],
KC [auth DP]
IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
FB [auth CQ],
LC [auth DQ]
IPR001857Large ribosomal subunit protein bL19Family
FB [auth CQ],
LC [auth DQ]
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
FB [auth CQ],
LC [auth DQ]
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
FB [auth CQ],
LC [auth DQ]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GB [auth CR],
MC [auth DR]
IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
GB [auth CR],
MC [auth DR]
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
GB [auth CR],
MC [auth DR]
IPR005813Large ribosomal subunit protein bL20Family
HB [auth CS],
NC [auth DS]
IPR028909Large ribosomal subunit protein bL21-likeFamily
HB [auth CS],
NC [auth DS]
IPR001787Large ribosomal subunit protein bL21Family
HB [auth CS],
NC [auth DS]
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
HB [auth CS],
NC [auth DS]
IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
D [auth AD],
Y [auth BD]
IPR002942RNA-binding S4 domainDomain
D [auth AD],
Y [auth BD]
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
D [auth AD],
Y [auth BD]
IPR022801Small ribosomal subunit protein uS4Family
D [auth AD],
Y [auth BD]
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth AD],
Y [auth BD]
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth AD],
Y [auth BD]
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IB [auth CT],
OC [auth DT]
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IB [auth CT],
OC [auth DT]
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IB [auth CT],
OC [auth DT]
IPR001063Large ribosomal subunit protein uL22Family
IB [auth CT],
OC [auth DT]
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IB [auth CT],
OC [auth DT]
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
JB [auth CU],
PC [auth DU]
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
JB [auth CU],
PC [auth DU]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
JB [auth CU],
PC [auth DU]
IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
JB [auth CU],
PC [auth DU]
IPR013025Large ribosomal subunit protein uL23-likeFamily
KB [auth CV],
QC [auth DV]
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
KB [auth CV],
QC [auth DV]
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
KB [auth CV],
QC [auth DV]
IPR003256Large ribosomal subunit protein uL24Family
KB [auth CV],
QC [auth DV]
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
KB [auth CV],
QC [auth DV]
IPR005824KOWDomain
KB [auth CV],
QC [auth DV]
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
LB [auth CW],
RC [auth DW]
IPR020055Ribosomal protein bL25, short-formFamily
LB [auth CW],
RC [auth DW]
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
LB [auth CW],
RC [auth DW]
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
LB [auth CW],
RC [auth DW]
IPR050070Bacterial ribosomal protein bL25Family
LB [auth CW],
RC [auth DW]
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
MB [auth CX],
SC [auth DX]
IPR001684Large ribosomal subunit protein bL27Family
MB [auth CX],
SC [auth DX]
IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
NB [auth CY],
TC [auth DY]
IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
NB [auth CY],
TC [auth DY]
IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
NB [auth CY],
TC [auth DY]
IPR026569Large ribosomal subunit protein bL28Family
NB [auth CY],
TC [auth DY]
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
OB [auth CZ],
UC [auth DZ]
IPR050063Universal ribosomal protein uL29Family
OB [auth CZ],
UC [auth DZ]
IPR001854Large ribosomal subunit protein uL29Family
OB [auth CZ],
UC [auth DZ]
IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
OB [auth CZ],
UC [auth DZ]
IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
PB [auth C0],
VC [auth D0]
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
PB [auth C0],
VC [auth D0]
IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
PB [auth C0],
VC [auth D0]
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
PB [auth C0],
VC [auth D0]
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
QB [auth C1],
WC [auth D1]
IPR002677Large ribosomal subunit protein bL32Family
QB [auth C1],
WC [auth D1]
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QB [auth C1],
WC [auth D1]
IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
RB [auth C2],
XC [auth D2]
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RB [auth C2],
XC [auth D2]
IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
RB [auth C2],
XC [auth D2]
IPR001705Large ribosomal subunit protein bL33Family
RB [auth C2],
XC [auth D2]
IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
E [auth AE],
Z [auth BE]
IPR000851Small ribosomal subunit protein uS5Family
E [auth AE],
Z [auth BE]
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth AE],
Z [auth BE]
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth AE],
Z [auth BE]
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth AE],
Z [auth BE]
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth AE],
Z [auth BE]
IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
E [auth AE],
Z [auth BE]
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
SB [auth C3],
YC [auth D3]
IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
SB [auth C3],
YC [auth D3]
IPR000271Large ribosomal subunit protein bL34Family
TB [auth C4],
ZC [auth D4]
IPR021137Large ribosomal subunit protein bL35-likeFamily
TB [auth C4],
ZC [auth D4]
IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
TB [auth C4],
ZC [auth D4]
IPR001706Large ribosomal subunit protein bL35Family
TB [auth C4],
ZC [auth D4]
IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
AD [auth D5],
UB [auth C5]
IPR000473Large ribosomal subunit protein bL36Family
AD [auth D5],
UB [auth C5]
IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
YB [auth DD]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
YB [auth DD]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
YB [auth DD]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
YB [auth DD]IPR000597Large ribosomal subunit protein uL3Family
DC [auth DI]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
DC [auth DI]IPR001790Large ribosomal subunit protein uL10Family
DC [auth DI]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
DC [auth DI]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
DC [auth DI]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
AA [auth BF],
F [auth AF]
IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
AA [auth BF],
F [auth AF]
IPR000529Small ribosomal subunit protein bS6Family
AA [auth BF],
F [auth AF]
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
AA [auth BF],
F [auth AF]
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
AA [auth BF],
F [auth AF]
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
BA [auth BG],
G [auth AG]
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
BA [auth BG],
G [auth AG]
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
BA [auth BG],
G [auth AG]
IPR000235Small ribosomal subunit protein uS7Family
BA [auth BG],
G [auth AG]
IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
BA [auth BG],
G [auth AG]
IPR023798Small ribosomal subunit protein uS7 domainDomain
CA [auth BH],
H [auth AH]
IPR000630Small ribosomal subunit protein uS8Family
CA [auth BH],
H [auth AH]
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
CA [auth BH],
H [auth AH]
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
DA [auth BI],
I [auth AI]
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
DA [auth BI],
I [auth AI]
IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
DA [auth BI],
I [auth AI]
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
DA [auth BI],
I [auth AI]
IPR000754Small ribosomal subunit protein uS9Family
DA [auth BI],
I [auth AI]
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth AA],
V [auth BA]
2MG Parent Component: G

A [auth AA],
V [auth BA]
4OC Parent Component: C

A [auth AA],
V [auth BA]
5MC Parent Component: C

A [auth AA],
V [auth BA]
G7M Parent Component: G

A [auth AA],
V [auth BA]
MA6 Parent Component: A

A [auth AA],
V [auth BA]
PSU Parent Component: U

A [auth AA],
V [auth BA]
UR3 Parent Component: U

GA [auth BL],
L [auth AL]
D2T Parent Component: ASP

QA [auth CA]1MG Parent Component: G

QA [auth CA]2MA Parent Component: A

QA [auth CA]2MG Parent Component: G

QA [auth CA]3TD Parent Component: U

QA [auth CA]5MC Parent Component: C

QA [auth CA]5MU Parent Component: U

QA [auth CA]6MZ Parent Component: A

QA [auth CA]G7M Parent Component: G

QA [auth CA]OMC Parent Component: C

QA [auth CA]OMG Parent Component: G

QA [auth CA]OMU Parent Component: U

QA [auth CA]PSU Parent Component: U

CB [auth CN],
IC [auth DN]
4D4 Parent Component: ARG

VB [auth DA]1MG Parent Component: G

VB [auth DA]2MA Parent Component: A

VB [auth DA]2MG Parent Component: G

VB [auth DA]3TD Parent Component: U

VB [auth DA]5MC Parent Component: C

VB [auth DA]5MU Parent Component: U

VB [auth DA]6MZ Parent Component: A

VB [auth DA]G7M Parent Component: G

VB [auth DA]H2U Parent Component: U

VB [auth DA]OMC Parent Component: C

VB [auth DA]OMG Parent Component: G

VB [auth DA]OMU Parent Component: U

VB [auth DA]PSU Parent Component: U

YB [auth DD]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
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