Ligand validation:5NDF

UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 5NDF designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5NDF_UDP_A_602	97%	33%	0.071	0.984	1.07	1.58	1	7	0	0	100%	1
5NDF_UDP_E_602	95%	29%	0.073	0.979	1.35	1.47	6	5	0	0	100%	1
5NDF_UDP_B_602	89%	35%	0.094	0.972	1.06	1.48	1	7	0	0	100%	1
5NDF_UDP_C_602	86%	24%	0.096	0.965	1.14	1.96	2	8	0	0	100%	1
5NDF_UDP_D_602	82%	24%	0.104	0.958	1.28	1.8	3	8	0	0	100%	1
5NDF_UDP_F_602	63%	23%	0.138	0.934	1.25	1.89	4	9	0	0	100%	1
6E7I_UDP_A_601	99%	27%	0.053	0.987	1.4	1.55	4	7	0	0	100%	1
5AJP_UDP_A_1570	98%	36%	0.056	0.982	1.01	1.49	1	4	0	0	100%	1
2FFU_UDP_A_601	96%	8%	0.059	0.97	2.57	2.07	6	10	0	0	100%	1
4D0T_UDP_C_1571	88%	32%	0.107	0.984	1.17	1.52	3	8	0	0	100%	1
5FV9_UDP_A_1570	77%	20%	0.126	0.967	1.52	1.86	4	9	3	0	100%	1
8X3Q_UDP_C_401	100%	3%	0.015	0.998	3.32	2.69	13	13	0	0	100%	1
8X3U_UDP_A_401	100%	3%	0.015	0.998	3.4	2.69	14	11	0	0	100%	1
8VH8_UDP_D_702	100%	67%	0.032	0.995	0.59	0.69	-	-	0	0	100%	1
2B69_UDP_A_900	100%	42%	0.032	0.992	1.03	1.21	2	4	0	0	100%	1
4GYW_UDP_C_1101	100%	37%	0.037	0.988	1.03	1.45	2	4	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.