Download MendeleyCrystal structure of escherichia coli gene product Yecd at 1.3 A resolution
Suhre, K., Claverie, J.-M., Abergel, C.To be published.
1J2R
Crystal structure of Escherichia coli gene product Yecd at 1.3 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1J2R/pdb
- Classification: Structural genomics, unknown function
- Organism(s): Escherichia coli
- Expression System: Escherichia coli K-12
- Mutation(s): Yes
- Deposited: 2003-01-09 Released: 2004-01-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 ?
- R-Value Free: 0.165
- R-Value Work: 0.145
- R-Value Observed: 0.146
Starting Models: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical isochorismatase family protein yecD | 199 | Escherichia coli | Mutation(s): 1 Gene Names: yecD EC: 3 |  | |
UniProt | |||||
Find proteins for P0ADI7 (Escherichia coli (strain K12)) Explore P0ADI7 Go to UniProtKB: P0ADI7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0ADI7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | E [auth A] F [auth A] G [auth B] H [auth B] I [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.30 ?
- R-Value Free: 0.165
- R-Value Work: 0.145
- R-Value Observed: 0.146
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 140.502 | ¦Á = 90 |
| b = 108.886 | ¦Â = 90 |
| c = 50.419 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| CCP4 | data scaling |
| TRUNCATE | data scaling |
| T-COFFEE | phasing |
| MODELLER | phasing |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2004-01-27 Deposition Author(s): Suhre, K., Claverie, J.-M., Abergel, C., Bacterial targets at IGS-CNRS, France (BIGS)
Revision History (Full details and data files)
- Version 1.0: 2004-01-27
Type: Initial release - Version 1.1: 2008-04-27
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance - Version 1.3: 2017-10-04
Changes: Refinement description - Version 1.4: 2021-11-10
Changes: Database references, Derived calculations - Version 1.5: 2023-10-25
Changes: Data collection, Refinement description
