Download Mendeley1.5A crystal structure of a thioredoxin-like protein NrdI from Bacillus subtilis
Wu, R., Zhang, R., Collart, F., Joachimiak, A.To be published.
1RLJ
Structural Genomics, a Flavoprotein NrdI from Bacillus subtilis
- PDB DOI: https://doi.org/10.2210/pdb1RLJ/pdb
- Classification: Structural Genomics, unknown function
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2003-11-25 Released: 2004-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.217
- R-Value Work: 0.192
- R-Value Observed: 0.192
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NrdI protein | 139 | Bacillus subtilis | Mutation(s): 0 Gene Names: NRDI, BSU17370 |  | |
UniProt | |||||
Find proteins for P50618 (Bacillus subtilis (strain 168)) Explore P50618 Go to UniProtKB: P50618 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P50618 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | D [auth A] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| IOD Query on IOD | B [auth A], C [auth A] | IODIDE ION I XMBWDFGMSWQBCA-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.217
- R-Value Work: 0.192
- R-Value Observed: 0.192
- Space Group: P 62
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 85.236 | ¦Á = 90 |
| b = 85.236 | ¦Â = 90 |
| c = 59.992 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2004-07-13 Deposition Author(s): Wu, R., Zhang, R., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-07-13
Type: Initial release - Version 1.1: 2008-04-29
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2024-02-14
Changes: Data collection, Database references, Derived calculations
