Download MendeleyCrystal Structure of TT0495 protein from Thermus thermophilus HB8
Lokanath, N.K., Terao, Y., Kunishima, N.To be published.
1X1E
Crystal Structure of TT0495 protein from Thermus thermophilus HB8
- PDB DOI: https://doi.org/10.2210/pdb1X1E/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-04-04 Released: 2006-07-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 ?
- R-Value Free: 0.215
- R-Value Work: 0.203
- R-Value Observed: 0.203
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 2-deoxy-D-gluconate 3-dehydrogenase | 239 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 1.1.1.125 |  | |
UniProt | |||||
Find proteins for Q53W82 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q53W82 Go to UniProtKB: Q53W82 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q53W82 | ||||
Sequence AnnotationsExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.76 ?
- R-Value Free: 0.215
- R-Value Work: 0.203
- R-Value Observed: 0.203
- Space Group: P 42 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 62.712 | α = 90 |
| b = 62.712 | β = 90 |
| c = 111.272 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2006-07-11 Deposition Author(s): Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2006-07-11
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Refinement description
