Download MendeleyCRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PERIPLASMIC PROTEIN
Patskovsky, Y.V., Strokopytov, B., Ramagopal, U., Almo, S.C.To be published.
1Y0G
CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS
- PDB DOI: https://doi.org/10.2210/pdb1Y0G/pdb
- Classification: LIPID BINDING PROTEIN
- Organism(s): Escherichia coli
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Membrane Protein: Yes OPM
- Deposited: 2004-11-15 Released: 2004-12-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 ?
- R-Value Free: 0.248
- R-Value Work: 0.228
- R-Value Observed: 0.228
Starting Model: experimental
View more details
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein yceI | 191 | Escherichia coli | Mutation(s): 0 Gene Names: yceI Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for P0A8X2 (Escherichia coli (strain K12)) Explore P0A8X2 Go to UniProtKB: P0A8X2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0A8X2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 8PP Query on 8PP | E [auth A], F [auth B], G [auth C], H [auth D] | 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL C46 H70 O VUNQJPPPTJIREN-CMAXTTDKSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 ?
- R-Value Free: 0.248
- R-Value Work: 0.228
- R-Value Observed: 0.228
- Space Group: C 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 188.17 | ¦Á = 90 |
| b = 41.93 | ¦Â = 126.33 |
| c = 130.25 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| BRUTE | model building |
| CNS | refinement |
| BRUTE | phasing |
Entry History
Deposition Data
- Released Date: 2004-12-21 Deposition Author(s): Patskovsky, Y.V., Strokopytov, B., Ramagopal, U., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2004-12-21
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.5: 2023-08-23
Changes: Data collection, Database references, Refinement description
