Download MendeleyX-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT4G09670
Center for Eukaryotic Structural Genomics (CESG)To be published.
1YDW
X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT4G09670
- PDB DOI: https://doi.org/10.2210/pdb1YDW/pdb
- Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
- Organism(s): Arabidopsis thaliana
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2004-12-26 Released: 2005-01-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.49 ?
- R-Value Free: 0.283
- R-Value Work: 0.218
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Re-refinement Note
A newer entry is available that reflects an alternative modeling of the original data: 2Q4E
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AX110P-like protein | 362 | Arabidopsis thaliana | Mutation(s): 6 Gene Names: At4g09670 EC: 1 |  | |
UniProt | |||||
Find proteins for Q9SZ83 (Arabidopsis thaliana) Explore Q9SZ83 Go to UniProtKB: Q9SZ83 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9SZ83 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.49 ?
- R-Value Free: 0.283
- R-Value Work: 0.218
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 58.197 | ¦Á = 90 |
| b = 107.663 | ¦Â = 90 |
| c = 129.748 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2005-01-11 Deposition Author(s): Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)
Revision History (Full details and data files)
- Version 1.0: 2005-01-11
Type: Initial release - Version 1.1: 2008-04-30
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
