Download MendeleyX-RAY STRUCTURE OF PUTATIVE HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN FROM RICE, AK104879
Center for Eukaryotic Structural Genomics (CESG)To be published.
1YVI
X-RAY STRUCTURE OF PUTATIVE HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN FROM RICE, AK104879
- PDB DOI: https://doi.org/10.2210/pdb1YVI/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Oryza sativa
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2005-02-15 Released: 2005-02-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.227
- R-Value Work: 0.172
- R-Value Observed: 0.175
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Re-refinement Note
A newer entry is available that reflects an alternative modeling of the original data: 2Q4F
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| histidine-containing phosphotransfer protein | 149 | Oryza sativa | Mutation(s): 0 Gene Names: AK104879 |  | |
UniProt | |||||
Find proteins for Q6VAK4 (Oryza sativa subsp. japonica) Explore Q6VAK4 Go to UniProtKB: Q6VAK4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q6VAK4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 ?
- R-Value Free: 0.227
- R-Value Work: 0.172
- R-Value Observed: 0.175
- Space Group: P 43 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 100.558 | α = 90 |
| b = 100.558 | β = 90 |
| c = 69.568 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2005-02-22 Deposition Author(s): Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Allard, S.T.M., Center for Eukaryotic Structural Genomics (CESG)
Revision History (Full details and data files)
- Version 1.0: 2005-02-22
Type: Initial release - Version 1.1: 2008-02-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2017-10-11
Changes: Refinement description - Version 1.4: 2018-01-24
Changes: Database references - Version 1.5: 2023-08-23
Changes: Data collection, Database references, Refinement description
