Download MendeleyCrystal Structure of Cobalamin Biosynthesis Precorrin-6Y Methylase (cbiE) from Archaeoglobus fulgidus
Kim, Y., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
2BB3
Crystal Structure of Cobalamin Biosynthesis Precorrin-6Y Methylase (cbiE) from Archaeoglobus fulgidus
- PDB DOI: https://doi.org/10.2210/pdb2BB3/pdb
- Classification: TRANSFERASE
- Organism(s): Archaeoglobus fulgidus DSM 4304
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2005-10-17 Released: 2005-11-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 ?
- R-Value Free: 0.274
- R-Value Work: 0.211
- R-Value Observed: 0.211
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| cobalamin biosynthesis precorrin-6Y methylase (cbiE) | 221 | Archaeoglobus fulgidus DSM 4304 | Mutation(s): 5 EC: 2.1.1 |  | |
UniProt | |||||
Find proteins for O29536 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O29536 Go to UniProtKB: O29536 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O29536 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAH Query on SAH | C [auth A], D [auth B] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.27 ?
- R-Value Free: 0.274
- R-Value Work: 0.211
- R-Value Observed: 0.211
- Space Group: C 2 2 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 88.191 | ¦Á = 90 |
| b = 88.418 | ¦Â = 90 |
| c = 115.932 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| SBC-Collect | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2005-11-29 Deposition Author(s): Kim, Y., Joachimiak, A., Xu, X., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2005-11-29
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
