Download MendeleyCrystal Structure of T.th.HB8 Serine Hydroxymethyltransferase
Goto, M., Kai, K., Miyahara, I., Hirotsu, K.To be published.
2DKJ
Crystal Structure of T.th.HB8 Serine Hydroxymethyltransferase
- PDB DOI: https://doi.org/10.2210/pdb2DKJ/pdb
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2006-04-11 Released: 2007-04-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 ?
- R-Value Free: 0.190
- R-Value Work: 0.180
- R-Value Observed: 0.180
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| serine hydroxymethyltransferase | 407 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 2.1.2.1 |  | |
UniProt | |||||
Find proteins for Q5SI56 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SI56 Go to UniProtKB: Q5SI56 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SI56 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PLP Query on PLP | D [auth A], F [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | C [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.15 ?
- R-Value Free: 0.190
- R-Value Work: 0.180
- R-Value Observed: 0.180
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 57.988 | ¦Á = 90 |
| b = 82.884 | ¦Â = 91.67 |
| c = 94.074 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| AMoRE | phasing |
Entry History
Deposition Data
- Released Date: 2007-04-24 Deposition Author(s): Kai, K., Goto, M., Miyahara, I., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-04-24
Type: Initial release - Version 1.1: 2007-10-03
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance - Version 1.3: 2023-10-25
Changes: Data collection, Database references, Derived calculations, Refinement description
