Download MendeleyCrystal Structure of Campylobacter Jejuni YceI Periplasmic Protein
Patskovsky, Y., Ramagopal, U., Almo, S.C.To be published.
2FGS
Crystal structure of Campylobacter jejuni YCEI protein, structural genomics
- PDB DOI: https://doi.org/10.2210/pdb2FGS/pdb
- Classification: LIPID BINDING PROTEIN
- Organism(s): Campylobacter jejuni
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2005-12-22 Released: 2006-01-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 ?
- R-Value Free: 0.280
- R-Value Work: 0.243
- R-Value Observed: 0.245
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative periplasmic protein | 179 | Campylobacter jejuni | Mutation(s): 0 Gene Names: Cj0420 |  | |
UniProt | |||||
Find proteins for Q79JB5 (Campylobacter jejuni) Explore Q79JB5 Go to UniProtKB: Q79JB5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q79JB5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 ?
- R-Value Free: 0.280
- R-Value Work: 0.243
- R-Value Observed: 0.245
- Space Group: P 6 2 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 179.535 | ¦Á = 90 |
| b = 179.535 | ¦Â = 90 |
| c = 50.577 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2006-01-10 Deposition Author(s): Patskovsky, Y., Ramagopal, U., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2006-01-10
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2021-02-03
Changes: Database references, Derived calculations, Structure summary - Version 1.4: 2023-08-30
Changes: Data collection, Database references, Refinement description
