Download MendeleyCrystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (T179I/Q199R)
Counago, R., Wilson, C.J., Wu, G., Myers, J.C., Wittung-Stafshede, P., Shamoo, Y.To be published.
2OO7
Crystal structure of a thermostable mutant of Bacillus subtilis Adenylate Kinase (T179I/Q199R)
- PDB DOI: https://doi.org/10.2210/pdb2OO7/pdb
- Classification: TRANSFERASE
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2007-01-25 Released: 2008-02-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.245
- R-Value Work: 0.197
Starting Model: experimental
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This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenylate kinase | 217 | Bacillus subtilis | Mutation(s): 2 Gene Names: adk EC: 2.7.4.3 |  | |
UniProt | |||||
Find proteins for P16304 (Bacillus subtilis (strain 168)) Explore P16304 Go to UniProtKB: P16304 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P16304 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AP5 Query on AP5 | E [auth A], H [auth B] | BIS(ADENOSINE)-5'-PENTAPHOSPHATE C20 H29 N10 O22 P5 OIMACDRJUANHTJ-XPWFQUROSA-N |  | ||
| ZN Query on ZN | C [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MG Query on MG | D [auth A], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 ?
- R-Value Free: 0.245
- R-Value Work: 0.197
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 34.81 | ¦Á = 90 |
| b = 75.76 | ¦Â = 98.15 |
| c = 77.46 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| CrystalClear | data collection |
| d*TREK | data reduction |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2008-02-05 Deposition Author(s): Counago, R., Wilson, C.J., Wu, G., Myers, J.C., Wittung-Stafshede, P., Shamoo, Y.
Revision History (Full details and data files)
- Version 1.0: 2008-02-05
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-18
Changes: Refinement description - Version 1.3: 2021-10-20
Changes: Database references, Derived calculations - Version 1.4: 2023-08-30
Changes: Data collection, Refinement description
