Download MendeleyCrystal structure of orotidine 5'-phosphate decarboxylase from Plasmodium falciparum.
Liu, Y., Lau, W., Lew, J., Amani, M., Hui, R., Pai, E.F.To be published.
2Q8L
Crystal structure of orotidine 5'-phosphate decarboxylase from Plasmodium falciparum
- PDB DOI: https://doi.org/10.2210/pdb2Q8L/pdb
- Classification: LYASE
- Organism(s): Plasmodium falciparum 3D7
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-06-11 Released: 2007-06-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.249
- R-Value Work: 0.216
- R-Value Observed: 0.217
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Orotidine-monophosphate-decarboxylase | 323 | Plasmodium falciparum 3D7 | Mutation(s): 0 Gene Names: PF10_0225 EC: 4.1.1.23 |  | |
UniProt | |||||
Find proteins for Q8IJH3 (Plasmodium falciparum (isolate 3D7)) Explore Q8IJH3 Go to UniProtKB: Q8IJH3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8IJH3 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.249
- R-Value Work: 0.216
- R-Value Observed: 0.217
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 68.563 | ¦Á = 90 |
| b = 70.909 | ¦Â = 90 |
| c = 70.201 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| CNS | phasing |
Entry History
Deposition Data
Revision History (Full details and data files)
- Version 1.0: 2007-06-19
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.3: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description
