Download MendeleyCrystal Structure of Pseudomonas Aeruginosa Opdo
Touw, D.S., Vijayaraghavan, J., Vandenberg, B.To be published.
2Y0K
Crystal Structure of Pseudomonas Aeruginosa OpdO
- PDB DOI: https://doi.org/10.2210/pdb2Y0K/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Membrane Protein: Yes OPMPDBTMMemProtMD
- Deposited: 2010-12-03 Released: 2011-12-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 ?
- R-Value Free: 0.243
- R-Value Work: 0.196
- R-Value Observed: 0.200
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PYROGLUTATMATE PORIN OPDO | 390 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Membrane Entity: Yes |  | |
UniProt | |||||
Find proteins for Q9I202 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I202 Go to UniProtKB: Q9I202 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9I202 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| C8E Query on C8E | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE C16 H34 O5 FEOZZFHAVXYAMB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.29 ?
- R-Value Free: 0.243
- R-Value Work: 0.196
- R-Value Observed: 0.200
- Space Group: C 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 149.455 | ¦Á = 90 |
| b = 78.929 | ¦Â = 91.19 |
| c = 50.761 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2011-12-21 Deposition Author(s): Touw, D.S., Vijayaraghavan, J., Vandenberg, B.
Revision History (Full details and data files)
- Version 1.0: 2011-12-21
Type: Initial release - Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
