Download MendeleyCrystal structure of dihydroorotase from Thermus thermophilus
Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G.To be published.
2Z00
Crystal structure of dihydroorotase from Thermus thermophilus
- PDB DOI: https://doi.org/10.2210/pdb2Z00/pdb
- Classification: HYDROLASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-05-06 Released: 2007-11-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.42 ?
- R-Value Free: 0.192
- R-Value Work: 0.188
- R-Value Observed: 0.188
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dihydroorotase | 426 | Thermus thermophilus HB8 | Mutation(s): 0 EC: 3.5.2.3 |  | |
UniProt | |||||
Find proteins for Q5SK67 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SK67 Go to UniProtKB: Q5SK67 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SK67 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A], C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.42 ?
- R-Value Free: 0.192
- R-Value Work: 0.188
- R-Value Observed: 0.188
- Space Group: P 65 2 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 129.937 | ¦Á = 90 |
| b = 129.937 | ¦Â = 90 |
| c = 209.906 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2007-11-06 Deposition Author(s): Kanagawa, M., Baba, S., Kuramitsu, S., Yokoyama, S., Kawai, G., Sampei, G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Revision History (Full details and data files)
- Version 1.0: 2007-11-06
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance - Version 1.2: 2024-11-20
Changes: Data collection, Database references, Derived calculations, Structure summary
