Download MendeleyCrystal structure of dimeric ferredoxin-like protein of unknown function (YP_288824.1) from Thermobifida fusca YX at 1.50 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3BGU
Crystal structure of a dimeric ferredoxin-like protein of unknown function (tfu_0763) from thermobifida fusca yx at 1.50 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3BGU/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Thermobifida fusca YX
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-11-27 Released: 2007-12-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 ?
- R-Value Free: 0.237
- R-Value Work: 0.197
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.5 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ferredoxin-like protein of unknown function | 116 | Thermobifida fusca YX | Mutation(s): 0 Gene Names: YP_288824.1, Tfu_0763 |  | |
UniProt | |||||
Find proteins for Q47RW6 (Thermobifida fusca (strain YX)) Explore Q47RW6 Go to UniProtKB: Q47RW6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q47RW6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NBZ Query on NBZ | N [auth A] | NITROBENZENE C6 H5 N O2 LQNUZADURLCDLV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | O [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | C [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 ?
- R-Value Free: 0.237
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: P 1 2 1
- Diffraction Data: https://doi.org/10.18430/M33BGU
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 44.07 | ¦Á = 90 |
| b = 35.27 | ¦Â = 104.09 |
| c = 76.63 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| ADSC | data collection |
| XDS | data reduction |
| SHELXD | phasing |
| SHARP | phasing |
Entry History
Deposition Data
- Released Date: 2007-12-11 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2007-12-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description - Version 1.4: 2023-01-25
Changes: Database references, Derived calculations - Version 1.5: 2024-11-13
Changes: Data collection, Structure summary
