Download MendeleyCrystal structure of spermidine synthase from Trypanosoma cruzi.
Bosch, J., Hol, W.G.J.To be published.
3BWB
Crystal structure of the apo form of spermidine synthase from Trypanosoma cruzi at 2.5 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3BWB/pdb
- Classification: TRANSFERASE
- Organism(s): Trypanosoma cruzi strain CL Brener
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-01-08 Released: 2008-04-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.248
- R-Value Work: 0.198
- R-Value Observed: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spermidine synthase | 304 | Trypanosoma cruzi strain CL Brener | Mutation(s): 0 Gene Names: Tc00.1047053510339.50 EC: 2.5.1.16 |  | |
UniProt | |||||
Find proteins for Q4DA73 (Trypanosoma cruzi (strain CL Brener)) Explore Q4DA73 Go to UniProtKB: Q4DA73 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4DA73 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.248
- R-Value Work: 0.198
- R-Value Observed: 0.201
- Space Group: P 1 21 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 43.669 | ¦Á = 90 |
| b = 96.996 | ¦Â = 106.33 |
| c = 69.649 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| ADSC | data collection |
| XDS | data reduction |
| XSCALE | data scaling |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2008-04-01 Deposition Author(s): Bosch, J., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)
Revision History (Full details and data files)
- Version 1.0: 2008-04-01
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance - Version 1.2: 2024-11-13
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary
