Download MendeleyHuman 1gG1 Fc fragment, 2.5 Angstrom structure.
Braden, B.C.To be published.
3DO3
Human 1gG1 Fc fragment, 2.5 Angstrom structure
- PDB DOI: https://doi.org/10.2210/pdb3DO3/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Mus musculus
- Mutation(s): Yes
- Deposited: 2008-07-03 Released: 2009-07-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.330
- R-Value Work: 0.280
- R-Value Observed: 0.280
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ig gamma-1 chain C region | 212 | Homo sapiens | Mutation(s): 2 Gene Names: IGHG1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01857 (Homo sapiens) Explore P01857 Go to UniProtKB: P01857 | |||||
PHAROS: P01857 GTEx: ENSG00000211896 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01857 | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | Go to GlyGen: P01857-2 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | C, D | 9 |  | N-Glycosylation | |
Glycosylation Resources | |||||
GlyTouCan: G33244HE GlyCosmos: G33244HE GlyGen: G33244HE | |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 ?
- R-Value Free: 0.330
- R-Value Work: 0.280
- R-Value Observed: 0.280
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 50.2053 | ¦Á = 90 |
| b = 80.2157 | ¦Â = 90 |
| c = 138.7493 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| CrystalClear | data collection |
| CNS | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2009-07-21 Deposition Author(s): Braden, B.C.
Revision History (Full details and data files)
- Version 1.0: 2009-07-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-08-30
Changes: Advisory, Data collection, Database references, Refinement description, Structure summary - Version 2.2: 2024-10-16
Changes: Structure summary
