Download MendeleyCrystal structure of a probable MutT1 protein from Bifidobacterium adolescentis
Palani, K., Burley, S.K., Swaminathan, S.To be published.
3FJY
Crystal structure of a probable MutT1 protein from Bifidobacterium adolescentis
- PDB DOI: https://doi.org/10.2210/pdb3FJY/pdb
- Classification: HYDROLASE
- Organism(s): Bifidobacterium adolescentis ATCC 15703
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-12-15 Released: 2009-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 ?
- R-Value Free: 0.263
- R-Value Work: 0.223
- R-Value Observed: 0.223
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable MutT1 protein | 364 | Bifidobacterium adolescentis ATCC 15703 | Mutation(s): 0 Gene Names: BAD_0126, mutT1 |  | |
UniProt | |||||
Find proteins for A0ZZM4 (Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)) Explore A0ZZM4 Go to UniProtKB: A0ZZM4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0ZZM4 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.15 ?
- R-Value Free: 0.263
- R-Value Work: 0.223
- R-Value Observed: 0.223
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 78.673 | ¦Á = 90 |
| b = 90.034 | ¦Â = 90 |
| c = 124.195 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CBASS | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SHELXD | phasing |
| SHARP | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2009-01-13 Deposition Author(s): Palani, K., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)
Revision History (Full details and data files)
- Version 1.0: 2009-01-13
Type: Initial release - Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary - Version 1.3: 2024-10-30
Changes: Data collection, Database references, Structure summary
