Download MendeleyThe crystal structure of a functionally unknown protein PEPE_1480 from Pediococcus pentosaceus ATCC 25745
Tan, K., Bigelow, L., Bearden, J., Joachimiak, A.To be published.
3M05
The crystal structure of a functionally unknown protein PEPE_1480 from Pediococcus pentosaceus ATCC 25745
- PDB DOI: https://doi.org/10.2210/pdb3M05/pdb
- Classification: structural genomics, unknown function
- Organism(s): Pediococcus pentosaceus ATCC 25745
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2010-03-02 Released: 2010-03-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.15 ?
- R-Value Free: 0.247
- R-Value Work: 0.196
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| uncharacterized protein PEPE_1480 | 114 | Pediococcus pentosaceus ATCC 25745 | Mutation(s): 0 Gene Names: PEPE_1480 |  | |
UniProt | |||||
Find proteins for Q03E61 (Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w)) Explore Q03E61 Go to UniProtKB: Q03E61 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q03E61 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A] E [auth A] F [auth B] G [auth C] H [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.15 ?
- R-Value Free: 0.247
- R-Value Work: 0.196
- R-Value Observed: 0.199
- Space Group: P 43 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 119.774 | ¦Á = 90 |
| b = 119.774 | ¦Â = 90 |
| c = 119.349 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| SHELXD | phasing |
| MLPHARE | phasing |
| DM | model building |
| RESOLVE | model building |
| HKL-3000 | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| RESOLVE | phasing |
Entry History
Deposition Data
- Released Date: 2010-03-16 Deposition Author(s): Tan, K., Bigelow, L., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2010-03-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2014-04-09
Changes: Data collection - Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
