Download MendeleyCrystal structure of the complex of ribosome inactivating protein with 7-methylguanosine triphosphate at 1.75A resolution
Kumar, M., Kushwaha, G.S., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.To be published.
3QJI
Crystal structure of the complex of ribosome inactivating protein with 7-methylguanosine triphosphate at 1.75A resolution
- PDB DOI: https://doi.org/10.2210/pdb3QJI/pdb
- Classification: HYDROLASE
- Organism(s): Momordica balsamina
- Mutation(s): No
- Deposited: 2011-01-29 Released: 2011-03-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 ?
- R-Value Free: 0.256
- R-Value Work: 0.209
- R-Value Observed: 0.211
Starting Model: experimental
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This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribosome inactivating protein | 246 | Momordica balsamina | Mutation(s): 0 EC: 3.2.2.22 |  | |
UniProt | |||||
Find proteins for D9J2T9 (Momordica balsamina) Explore D9J2T9 Go to UniProtKB: D9J2T9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D9J2T9 | ||||
Glycosylation | |||||
| Glycosylation Sites: 1 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MGP Query on MGP | C [auth A] | 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE C11 H19 N5 O14 P3 DKVRNHPCAOHRSI-KQYNXXCUSA-O |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 ?
- R-Value Free: 0.256
- R-Value Work: 0.209
- R-Value Observed: 0.211
- Space Group: H 3
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 130.061 | ¦Á = 90 |
| b = 130.061 | ¦Â = 90 |
| c = 40.276 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| AMoRE | phasing |
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2011-03-09 Deposition Author(s): Kumar, M., Kushwaha, G.S., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2011-03-09
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary - Version 2.2: 2024-10-16
Changes: Structure summary
