Download MendeleyCrystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase from Burkholderia pseudomallei
Edwards, T.E.To be published.
3EZ4
Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase from Burkholderia pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb3EZ4/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia pseudomallei
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-10-22 Released: 2008-11-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.244
- R-Value Work: 0.195
- R-Value Observed: 0.197
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | 269 | Burkholderia pseudomallei | Mutation(s): 0 Gene Names: 721, 76, 808, BPSL2824, panB EC: 2.1.2.11 |  | |
UniProt | |||||
Find proteins for Q3JP15 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JP15 Go to UniProtKB: Q3JP15 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JP15 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | K [auth E], L [auth F], M [auth G], N [auth H], O [auth I] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 ?
- R-Value Free: 0.244
- R-Value Work: 0.195
- R-Value Observed: 0.197
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 173.784 | ¦Á = 90 |
| b = 187.556 | ¦Â = 90 |
| c = 83.493 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2008-11-04 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2008-11-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
