Download MendeleyCrystal structure of the complex of dimeric goat lactoperoxidase with diethylene glycol at 2.9 A resolution
Vikram, G., Singh, R.P., Singh, A.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.To be published.
3NIU
Crystal structure of the complex of dimeric goat lactoperoxidase with diethylene glycol at 2.9 A resolution
- PDB DOI: https://doi.org/10.2210/pdb3NIU/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Capra hircus
- Mutation(s): No
- Deposited: 2010-06-16 Released: 2010-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.94 ?
- R-Value Free: 0.232
- R-Value Work: 0.197
- R-Value Observed: 0.201
Starting Model: experimental
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This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lactoperoxidase | 595 | Capra hircus | Mutation(s): 0 EC: 1.11.1.7 |  | |
UniProt | |||||
Find proteins for A0A452E9Y6 (Capra hircus) Explore A0A452E9Y6 Go to UniProtKB: A0A452E9Y6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A452E9Y6 | ||||
Glycosylation | |||||
| Glycosylation Sites: 4 | |||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HEM Query on HEM | M [auth A], S [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L |  | ||
| NAG Query on NAG | I [auth A], O [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | ||
| PEG Query on PEG | N [auth A], T [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | J [auth A], K [auth A], P [auth B], Q [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| CA Query on CA | L [auth A], R [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SEP Query on SEP | A, B | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.94 ?
- R-Value Free: 0.232
- R-Value Work: 0.197
- R-Value Observed: 0.201
- Space Group: P 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 59.199 | ¦Á = 79.93 |
| b = 75.587 | ¦Â = 77.86 |
| c = 83.808 | ¦Ă = 72.5 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| MOLREP | phasing |
| REFMAC | refinement |
| AUTOMAR | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2010-07-14 Deposition Author(s): Vikram, G., Singh, R.P., Singh, A.K., Sinha, M., Kaur, P., Sharma, S., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2010-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-11-01
Changes: Data collection, Database references, Refinement description, Structure summary - Version 2.2: 2024-11-13
Changes: Structure summary
