4FX7

Structure of Sym2 D9V+D55V+D130V+D176V

PDB DOI: https://doi.org/10.2210/pdb4FX7/pdb

Classification: LYASE
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2012-07-02 Released: 2013-10-02
Deposition Author(s): Sterner, R., Sperl, J.M., Rajendran, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.08 ?
R-Value Free:
0.233 (Depositor), 0.230 (DCC)
R-Value Work:
0.172 (Depositor), 0.170 (DCC)
R-Value Observed:
0.175 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structure of Sym2 D9V+D55V+D130V+D176V

Sterner, R., Sperl, J.M., Rajendran, C.

To be published.

Macromolecule Content

Total Structure Weight: 109.78 kDa
Atom Count: 7,577
Modelled Residue Count: 960
Deposited Residue Count: 1,004
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Imidazole glycerol phosphate synthase subunit HisF	A, B, C, D	251	Thermotoga maritima MSB8	Mutation(s): 7 Gene Names: hisF, TM_1036 EC: 4.1.3 (PDB Primary Data), 4.3.2.10 (UniProt)
UniProt
Find proteins for Q9X0C6 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0C6 Go to UniProtKB: Q9X0C6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9X0C6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PI Query on PI Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain I [auth C] SDF format, chain J [auth C] SDF format, chain K [auth D] SDF format, chain L [auth D] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain I [auth C] MOL2 format, chain J [auth C] MOL2 format, chain K [auth D] MOL2 format, chain L [auth D] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B] mmCIF format, chain I [auth C] mmCIF format, chain J [auth C] mmCIF format, chain K [auth D] mmCIF format, chain L [auth D]	E [auth A] F [auth A] G [auth B] H [auth B] I [auth C] E [auth A], F [auth A], G [auth B], H [auth B], I [auth C], J [auth C], K [auth D], L [auth D]	HYDROGENPHOSPHATE ION H O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth D] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain I [auth C] Focus chain J [auth C] Focus chain K [auth D] Focus chain L [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.08 ?
R-Value Free: 0.233 (Depositor), 0.230 (DCC)
R-Value Work: 0.172 (Depositor), 0.170 (DCC)
R-Value Observed: 0.175 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( ? )	Angle ( ? )
a = 66.616	α = 90
b = 83.265	β = 102.66
c = 80.154	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-10-02

Deposition Author(s):

Sterner, R.

Sperl, J.M.

Rajendran, C.

Revision History (Full details and data files)

Version 1.0: 2013-10-02
Type: Initial release
Version 1.1: 2017-06-07
Changes: Database references, Structure summary
Version 1.2: 2018-01-24
Changes: Structure summary
Version 1.3: 2024-02-28
Changes: Data collection, Database references, Derived calculations

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Help and Resources

4FX7

Structure of Sym2 D9V+D55V+D130V+D176V

Structure of Sym2 D9V+D55V+D130V+D176V

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)