Download MendeleyCrystal Structure of Periplasmic binding Protein Type 1 from Bordetella pertussis Tohama I
Kim, Y., Joachimiak, G., Clancy, S., Joachimiak, A.To be published.
4MPT
Crystal Structure of Periplasmic binding Protein Type 1 from Bordetella pertussis Tohama I
- PDB DOI: https://doi.org/10.2210/pdb4MPT/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Bordetella pertussis Tohama I
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2013-09-13 Released: 2013-12-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 ?
- R-Value Free: 0.176
- R-Value Work: 0.160
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative leu/ile/val-binding protein | 380 | Bordetella pertussis Tohama I | Mutation(s): 0 Gene Names: BP0622 |  | |
UniProt | |||||
Find proteins for Q7VS30 (Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)) Explore Q7VS30 Go to UniProtKB: Q7VS30 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q7VS30 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACY Query on ACY | C [auth A], E [auth B], F [auth B] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 ?
- R-Value Free: 0.176
- R-Value Work: 0.160
- R-Value Observed: 0.163
- Space Group: P 61
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 86.565 | ¦Á = 90 |
| b = 86.565 | ¦Â = 90 |
| c = 194.053 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | data collection |
| HKL-3000 | phasing |
| SHELXS | phasing |
| MLPHARE | phasing |
| DM | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
Entry History
Deposition Data
- Released Date: 2013-12-11 Deposition Author(s): Kim, Y., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2013-12-11
Type: Initial release - Version 1.1: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
