4NHI

Crystal structure of Hen egg-white lysozyme in Tris buffer at pH 7.5 with Magnesium formate

PDB DOI: https://doi.org/10.2210/pdb4NHI/pdb

Classification: HYDROLASE
Organism(s): Gallus gallus
Mutation(s): No

Deposited: 2013-11-05 Released: 2014-11-05
Deposition Author(s): Lim, H., Rho, J., Hyun, J.K., Kim, Y.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.34 ?
R-Value Free: 0.218
R-Value Work: 0.167
R-Value Observed: 0.170

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Hen egg-white lysozyme in Tris buffer at pH 7.5 with Magnesium formate

Lim, H., Rho, J., Hyun, J.K., Kim, Y.J.

To be published.

Macromolecule Content

Total Structure Weight: 14.33 kDa
Atom Count: 1,126
Modelled Residue Count: 129
Deposited Residue Count: 129
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme C	A	129	Gallus gallus	Mutation(s): 0 EC: 3.2.1.17
UniProt
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00698
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.34 ?
R-Value Free: 0.218
R-Value Work: 0.167
R-Value Observed: 0.170
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( ? )	Angle ( ? )
a = 76.594	α = 90
b = 76.594	β = 90
c = 37.065	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-11-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-11-05
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-11-13
Changes: Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.