Download MendeleyHigh-resolution structure of XacCel5A in complex with cellopentaose
Paiva, J.H., Murakami, M.T.To be published.
4W7W
High-resolution structure of XacCel5A in complex with cellopentaose
- PDB DOI: https://doi.org/10.2210/pdb4W7W/pdb
- Classification: HYDROLASE
- Organism(s): Xanthomonas citri pv. citri str. 306
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-08-22 Released: 2015-10-21
- Funding Organization(s): Sao Paulo Research Foundation (FAPESP)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 ?
- R-Value Free: 0.160
- R-Value Work: 0.141
- R-Value Observed: 0.141
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 2.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cellulase | 332 | Xanthomonas citri pv. citri str. 306 | Mutation(s): 0 Gene Names: egl, XAC0030 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Oligosaccharides
Biologically Interesting Molecules (External Reference) 2 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900005 Query on PRD_900005 | B | beta-cellobiose | Oligosaccharide / Metabolism |  | |
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900014 Query on PRD_900014 | C | alpha-cellotriose | Oligosaccharide / Metabolism |  | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 ?
- R-Value Free: 0.160
- R-Value Work: 0.141
- R-Value Observed: 0.141
- Space Group: P 21 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 79.874 | ¦Á = 90 |
| b = 82.018 | ¦Â = 90 |
| c = 48.253 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-10-21 Deposition Author(s): Paiva, J.H., Murakami, M.T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Sao Paulo Research Foundation (FAPESP) | Brazil | 2013/13309-0 and 2014/07135-1 |
Revision History (Full details and data files)
- Version 1.0: 2015-10-21
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description - Version 1.2: 2019-04-17
Changes: Author supporting evidence, Data collection - Version 1.3: 2020-01-01
Changes: Author supporting evidence - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-09-27
Changes: Data collection, Database references, Refinement description, Structure summary - Version 2.2: 2024-10-30
Changes: Structure summary
