Download MendeleyCrystal structure of Ribose-5-phosphate isomerase A from Pseudomonas aeruginosa
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
4X84
Crystal structure of Ribose-5-phosphate isomerase A from Pseudomonas aeruginosa
- PDB DOI: https://doi.org/10.2210/pdb4X84/pdb
- Classification: ISOMERASE
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-12-10 Released: 2014-12-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 ?
- R-Value Free: 0.157
- R-Value Work: 0.138
- R-Value Observed: 0.139
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ribose-5-phosphate isomerase A | 231 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: rpiA, PA0330 EC: 5.3.1.6 |  | |
UniProt | |||||
Find proteins for Q9I6G1 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I6G1 Go to UniProtKB: Q9I6G1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9I6G1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FLC Query on FLC | E [auth A], F [auth B], G [auth C], H [auth D] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 ?
- R-Value Free: 0.157
- R-Value Work: 0.138
- R-Value Observed: 0.139
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M34X84
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 41.07 | ¦Á = 90 |
| b = 142.79 | ¦Â = 90 |
| c = 161.21 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| PHASER | phasing |
| ARP | model building |
| Coot | model building |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data scaling |
Entry History
Deposition Data
- Released Date: 2014-12-31 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2014-12-31
Type: Initial release - Version 1.1: 2023-09-27
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy, Structure summary
