Download MendeleyA cytochrome c-calixarene structure
Mallon, M.M., McGovern, R.E., McCarty, A.A., Crowley, P.B.To be published.
4YE1
A cytochrome c plus calixarene structure - alternative ligand binding mode
- PDB DOI: https://doi.org/10.2210/pdb4YE1/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-02-23 Released: 2015-05-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.39 ?
- R-Value Free: 0.160
- R-Value Work: 0.130
- R-Value Observed: 0.132
Starting Model: experimental
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This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cytochrome c iso-1 | 108 | Saccharomyces cerevisiae S288C | Mutation(s): 1 Gene Names: CYC1, YJR048W, J1653 |  | |
UniProt | |||||
Find proteins for P00044 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P00044 Go to UniProtKB: P00044 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00044 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| T3Y Query on T3Y | D [auth A], F [auth B], G [auth B] | 25,26,27,28-tetrahydroxypentacyclo[19.3.1.1~3,7~.1~9,13~.1~15,19~]octacosa-1(25),3(28),4,6,9(27),10,12,15(26),16,18,21,23-dodecaene-5,11,17,23-tetrasulfonic acid C28 H24 O16 S4 JFYBCAFLVNKHHG-UHFFFAOYSA-N |  | ||
| HEC Query on HEC | C [auth A], E [auth B] | HEME C C34 H34 Fe N4 O4 HXQIYSLZKNYNMH-LJNAALQVSA-N |  | ||
| GOL Query on GOL | H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.39 ?
- R-Value Free: 0.160
- R-Value Work: 0.130
- R-Value Observed: 0.132
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 35.85 | ¦Á = 90 |
| b = 56.07 | ¦Â = 90 |
| c = 108.04 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2015-05-13 Deposition Author(s): Mallon, M.M., McGovern, R.E., McCarty, A.A., Crowley, P.B.
Revision History (Full details and data files)
- Version 1.0: 2015-05-13
Type: Initial release - Version 2.0: 2024-01-10
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Refinement description, Structure summary
