Download MendeleyThe crystal structure of a peptidoglycan synthetase from Bifidobacterium adolescentis ATCC 15703
Cuff, M., Tan, K., Joachimiak, G., Clancy, S., Joachimiak, A.To be published.
4YE5
The crystal structure of a peptidoglycan synthetase from Bifidobacterium adolescentis ATCC 15703
- PDB DOI: https://doi.org/10.2210/pdb4YE5/pdb
- Classification: penicillin binding protein
- Organism(s): Bifidobacterium adolescentis ATCC 15703
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-02-23 Released: 2015-03-18
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 ?
- R-Value Free: 0.224
- R-Value Work: 0.189
- R-Value Observed: 0.191
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptidoglycan synthetase penicillin-binding protein 3 | 566 | Bifidobacterium adolescentis ATCC 15703 | Mutation(s): 0 Gene Names: ftsI, BAD_1107 |  | |
UniProt | |||||
Find proteins for A1A2F5 (Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)) Explore A1A2F5 Go to UniProtKB: A1A2F5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1A2F5 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | H [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 ?
- R-Value Free: 0.224
- R-Value Work: 0.189
- R-Value Observed: 0.191
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 85.956 | ¦Á = 90 |
| b = 85.709 | ¦Â = 90 |
| c = 227.476 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-03-18 Deposition Author(s): Cuff, M., Tan, K., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM094585 |
Revision History (Full details and data files)
- Version 1.0: 2015-03-18
Type: Initial release - Version 1.1: 2017-09-20
Changes: Author supporting evidence, Derived calculations, Source and taxonomy - Version 1.2: 2019-12-25
Changes: Author supporting evidence - Version 1.3: 2024-11-06
Changes: Data collection, Database references, Structure summary
