Download MendeleyThe antibiotics linezolid and sutezolid are ligands for Mycobacterium tuberculosis EthR
Nikiforov, P.O., Blaszczyk, M., Mendes, V., Boshoff, H.I., Barry, C.E., Blundell, T.L., Abell, C.To be published.
5NZ0
Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with linezolid
- PDB DOI: https://doi.org/10.2210/pdb5NZ0/pdb
- Classification: TRANSCRIPTION
- Organism(s): Mycobacterium tuberculosis H37Rv
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-05-12 Released: 2018-05-30
- Funding Organization(s): Bill & Melinda Gates Foundation
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.82 ?
- R-Value Free: 0.220
- R-Value Work: 0.184
- R-Value Observed: 0.186
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HTH-type transcriptional regulator EthR | 228 | Mycobacterium tuberculosis H37Rv | Mutation(s): 0 Gene Names: ethR, etaR, Rv3855 |  | |
UniProt | |||||
Find proteins for P9WMC1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WMC1 Go to UniProtKB: P9WMC1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P9WMC1 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZLD Query on ZLD | B [auth A] | N-{[(5S)-3-(3-fluoro-4-morpholin-4-ylphenyl)-2-oxo-1,3-oxazolidin-5-yl]methyl}acetamide C16 H20 F N3 O4 TYZROVQLWOKYKF-ZDUSSCGKSA-N |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.82 ?
- R-Value Free: 0.220
- R-Value Work: 0.184
- R-Value Observed: 0.186
- Space Group: P 41 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 121.382 | ¦Á = 90 |
| b = 121.382 | ¦Â = 90 |
| c = 33.78 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-05-30 Deposition Author(s): Blaszczyk, M., Mendes, V., Nikiforov, P.O., Blundell, T.L.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Bill & Melinda Gates Foundation | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2018-05-30
Type: Initial release - Version 1.1: 2024-01-17
Changes: Data collection, Database references, Refinement description
