Download MendeleyStructure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR
Lin, J., Zhao, H., Shaath, D., Wehmeye, G., Kolin, A., Egan, S.To be published.
5U9E
Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR
- PDB DOI: https://doi.org/10.2210/pdb5U9E/pdb
- Classification: TRANSCRIPTION
- Organism(s): Bacteria Latreille et al. 1825
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-12-16 Released: 2017-12-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 ?
- R-Value Free: 0.195
- R-Value Work: 0.165
- R-Value Observed: 0.167
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HTH-type transcriptional activator RhaR | 163 | Bacteria Latreille et al. 1825 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P09378 (Escherichia coli (strain K12)) Explore P09378 Go to UniProtKB: P09378 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P09378 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RM4 Query on RM4 | C [auth A], E [auth B] | beta-L-rhamnopyranose C6 H12 O5 SHZGCJCMOBCMKK-YJRYQGEOSA-N |  | ||
| NI Query on NI | D [auth A], F [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.02 ?
- R-Value Free: 0.195
- R-Value Work: 0.165
- R-Value Observed: 0.167
- Space Group: P 43 21 2
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 100.618 | ¦Á = 90 |
| b = 100.618 | ¦Â = 90 |
| c = 95.204 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Released Date: 2017-12-20 Deposition Author(s): Zhao, H.
Revision History (Full details and data files)
- Version 1.0: 2017-12-20
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description, Structure summary
