Download MendeleySaccharomyces cerevisiae OYE 3 soaked with p-hydroxybenzaldehyde
Stewart, J., Powell III, R.W.To be published.
5V4P
Saccharomyces cerevisiae OYE 3 soaked with p-hydroxybenzaldehyde
- PDB DOI: https://doi.org/10.2210/pdb5V4P/pdb
- Classification: OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
- Organism(s): Saccharomyces cerevisiae S288C
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-03-10 Released: 2018-03-14
- Funding Organization(s): National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 ?
- R-Value Free: 0.218
- R-Value Work: 0.182
- R-Value Observed: 0.184
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NADPH dehydrogenase 3 | 400 | Saccharomyces cerevisiae S288C | Mutation(s): 0 Gene Names: OYE3, YPL171C, P2291 EC: 1.6.99.1 |  | |
UniProt | |||||
Find proteins for P41816 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P41816 Go to UniProtKB: P41816 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P41816 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | C [auth A], H [auth B] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| TOE Query on TOE | F [auth A], G [auth A], K [auth B], L [auth B] | 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL C7 H16 O4 JLGLQAWTXXGVEM-UHFFFAOYSA-N |  | ||
| HBA Query on HBA | D [auth A], I [auth B] | P-HYDROXYBENZALDEHYDE C7 H6 O2 RGHHSNMVTDWUBI-UHFFFAOYSA-N |  | ||
| NA Query on NA | E [auth A], J [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.88 ?
- R-Value Free: 0.218
- R-Value Work: 0.182
- R-Value Observed: 0.184
- Space Group: P 21 21 21
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 61.533 | α = 90 |
| b = 106.421 | β = 90 |
| c = 141.01 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-03-14 Deposition Author(s): Stewart, J., Powell III, R.W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | CHE-1111791 |
Revision History (Full details and data files)
- Version 1.0: 2018-03-14
Type: Initial release - Version 1.1: 2019-11-27
Changes: Author supporting evidence - Version 1.2: 2024-03-06
Changes: Data collection, Database references, Derived calculations
