5YPW

Crystal structure of IlvN.Val-1b


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 ?
  • R-Value Free: 0.233 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystallographic Structures of IlvN¡¤Val/Ile Complexes: Conformational Selectivity for Feedback Inhibition of Aceto Hydroxy Acid Synthases.

Bansal, A.Karanth, N.M.Demeler, B.Schindelin, H.Sarma, S.P.

(2019) Biochemistry 58: 1992-2008

  • DOI: https://doi.org/10.1021/acs.biochem.9b00050
  • Primary Citation of Related Structures:  
    5YPP, 5YPW, 5YPY, 5YUM

  • PubMed Abstract: 

    Conformational factors that predicate selectivity for valine or isoleucine binding to IlvN leading to the regulation of aceto hydroxy acid synthase I (AHAS I) of Escherichia coli have been determined for the first time from high-resolution (1.9-2.43 ?) crystal structures of IlvN¡¤Val and IlvN¡¤Ile complexes. The valine and isoleucine ligand binding pockets are located at the dimer interface. In the IlvN¡¤Ile complex, among residues in the binding pocket, the side chain of Cys 43 is 2-fold disordered (¦Ö 1 angles of gauche - and trans). Only one conformation can be observed for the identical residue in the IlvN¡¤Val complexes. In a reversal, the side chain of His 53 , located at the surface of the protein, exhibits two conformations in the IlvN¡¤Val complex. The concerted conformational switch in the side chains of Cys 43 and His 53 may play an important role in the regulation of the AHAS I holoenzyme activity. A significant result is the establishment of the subunit composition in the AHAS I holoenzyme by analytical ultracentrifugation. Solution nuclear magnetic resonance and analytical ultracentrifugation experiments have also provided important insights into the hydrodynamic properties of IlvN in the ligand-free and -bound states. The structural and biophysical data unequivocally establish the molecular basis for differential binding of the ligands to IlvN and a rationale for the resistance of IlvM to feedback inhibition by the branched-chain amino acids.


  • Organizational Affiliation

    Molecular Biophysics Unit , Indian Institute of Science , Bangalore , Karnataka 560012 , India.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Acetolactate synthase isozyme 1 small subunit
A, B, C, D, E
A, B, C, D, E, F, G, H
98Escherichia coli O157:H7Mutation(s): 0 
Gene Names: ilvNZ5164ECs4611
EC: 2.2.1.6
UniProt
Find proteins for P0ADF8 (Escherichia coli (strain K12))
Explore P0ADF8 
Go to UniProtKB:  P0ADF8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ADF8
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 ?
  • R-Value Free: 0.233 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 
  • Space Group: P 1 21 1
Unit Cell:
Length ( ? )Angle ( ? )
a = 63.04¦Á = 90
b = 74.67¦Â = 99.37
c = 88.81¦Ã = 90
Software Package:
Software NamePurpose
PHENIXrefinement
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
IndiaDSTO1544

Revision History  (Full details and data files)

  • Version 1.0: 2018-09-19
    Type: Initial release
  • Version 1.1: 2019-04-03
    Changes: Data collection, Database references
  • Version 1.2: 2019-04-10
    Changes: Data collection, Database references
  • Version 1.3: 2019-05-01
    Changes: Data collection, Database references
  • Version 1.4: 2023-11-22
    Changes: Data collection, Database references, Refinement description
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