Download MendeleyA Serpin structure
Vashchenko, G.V., Das, S., Moon, K.-M., Rogalski, J.C., Taves, M.D., Soma, K.K., Van Petegem, F., Foster, L.J., Hammond, G.L.(2016) J Biol Chem
5HGC
A Serpin structure
- PDB DOI: https://doi.org/10.2210/pdb5HGC/pdb
- Classification: BLOOD CLOTTING
- Organism(s): Taeniopygia guttata
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-01-08 Released: 2016-04-06
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.43 ?
- R-Value Free: 0.217
- R-Value Work: 0.162
- R-Value Observed: 0.164
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Serpin | 380 | Taeniopygia guttata | Mutation(s): 0 Gene Names: SERPINA12-1 |  | |
UniProt | |||||
Find proteins for H0ZQY2 (Taeniopygia guttata) Explore H0ZQY2 Go to UniProtKB: H0ZQY2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H0ZQY2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HCY Query on HCY | B [auth A] | (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione C21 H30 O5 JYGXADMDTFJGBT-VWUMJDOOSA-N |  | ||
| BDG Query on BDG | F [auth A] | 2,6-diamino-2,6-dideoxy-alpha-D-glucopyranose C6 H14 N2 O4 SQTHUUHOUPJYLK-UKFBFLRUSA-N |  | ||
| SO4 Query on SO4 | C [auth A], D [auth A], E [auth A], G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.43 ?
- R-Value Free: 0.217
- R-Value Work: 0.162
- R-Value Observed: 0.164
- Space Group: P 63
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 116.15 | ¦Á = 90 |
| b = 116.15 | ¦Â = 90 |
| c = 72.73 | ¦Ă = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-04-06 Deposition Author(s): Das, S., Vashchenko, G.V., Van Petegem, F.
Revision History (Full details and data files)
- Version 1.0: 2016-04-06
Type: Initial release - Version 1.1: 2017-09-27
Changes: Author supporting evidence, Database references, Derived calculations - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description, Structure summary
