Download MendeleyStructure of Apo AtmM
Alvarado, S.K., Miller, M.D., Thorson, J.S., Phillips Jr., G.N.To be published.
6UVQ
Crystal structure of Apo AtmM
- PDB DOI: https://doi.org/10.2210/pdb6UVQ/pdb
- Classification: TRANSFERASE
- Organism(s): Actinomadura melliaura
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2019-11-04 Released: 2020-11-25
- Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 ?
- R-Value Free: 0.224
- R-Value Work: 0.181
- R-Value Observed: 0.183
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Currently 6UVQ does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| D-glucose O-methyltransferase | 268 | Actinomadura melliaura | Mutation(s): 0 Gene Names: atM |  | |
UniProt | |||||
Find proteins for Q0H2W9 (Actinomadura melliaura) Explore Q0H2W9 Go to UniProtKB: Q0H2W9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q0H2W9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | C [auth A], E [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| MG Query on MG | D [auth A], F [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 ?
- R-Value Free: 0.224
- R-Value Work: 0.181
- R-Value Observed: 0.183
- Space Group: P 1 2 1
Unit Cell:
| Length ( ? ) | Angle ( ? ) |
|---|---|
| a = 69.463 | ¦Á = 90 |
| b = 52.997 | ¦Â = 93.34 |
| c = 70.842 | ¦Ă = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| DIALS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Structure Validation
Currently 6UVQ does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2020-11-25 Deposition Author(s): Alvarado, S.K., Wang, Z., Miller, M.D., Thorson, J.S., Phillips Jr., G.N.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01 GM115261 |
| National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | U01 GM098248 |
| National Science Foundation (NSF, United States) | United States | STC 1231306 |
Revision History (Full details and data files)
- Version 1.0: 2020-11-25
Type: Initial release - Version 1.1: 2021-09-15
Changes: Database references, Structure summary - Version 1.2: 2023-10-11
Changes: Data collection, Refinement description
